| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_3032 |
|---|
| Symbol | |
|---|
| ID | 5198234 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | + |
|---|
| Start bp | 3321758 |
|---|
| End bp | 3324382 |
|---|
| Gene Length | 2625 bp |
|---|
| Protein Length | 874 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640582581 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_001263520 |
|---|
| Protein GI | 148555938 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG4206] Outer membrane cobalamin receptor protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.793097 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGACGGA CTATGTTGCA GGTGCTCGCA GCGAGCACCA TTTTGACGGT GGGATGGGCG
GCGAGCGCCC ATGCGCAGGC GGTGGGCGCG GCCCCGGCCG ATGCGGCCCA CACAGCGGAT
GAAGAGATCG TCGTCGTCGG ATCGTCGCTG CGCGTGACGG AGGCGAAGAT CGCGCGGGGC
ACCACGCCGG TGCAGATCGT CTCCGCCGAG GAGATGCAGC TTTCCGGCCA GAAGGCGGTG
GCGGACCTCG TCCGTACCCA GCCGGTGTTC AGCGGCACCT CCGCTTCGGC CGAAGGCCAG
GGCCTCGGCC GTTCGACCCT CAACCTGCGC GGCGTCGGCG ATCAATATAC GCTGTCGCTG
GTCAACGGTC GCCGCTTCGC GGTGAACGGC GCCGCCAATG TCGGCATCAT CCCGGAATCG
GCGATCGAGC GGATCGAGGT GCTGACCTCG GGTGCCAGCG CCATCTATGG CTCGGATGCG
GTGGCCGGCG TGGTCAACAT CGTGCTGCGC AAGGATGCCG ATGGCGTCGG CGGCTCGGTT
CGCTATGGCG AAGGGACGGC CCGTCTCGCC GAGCGTCAGG TTTCGGCCTA TATCGGCAGC
CGCGGTGACA ATGGCGGCTT CATCCTCTCG GTCGACCATT TCGAGCGCAA AGGGCTGCGC
GGCAAGGAAC TGCCCACCGG CACCAATAAT CTGGCGCGCT TCGGCGGCAT CGACTTTCGT
AGCGACGCGA CCAATCCCGG CCGGATCATC CTGCCCAATG GCGACAATGT GATCCTCAAC
ACCGACCTGT TCGGCCCGGG CACCTTCTCG AACAATCCGG CGAGCTACCG TCCGTTCGTC
TATGATCGCG ACGCGCATGA CCGCTGGGAC GGCGGCATCT ACGCGATCTC GCCGACCAAG
CGGACCTCGC TGATGTTCTC GGGCCATCGC GATCTCGGCC CGGATACCAA ACTCAGCCTG
GACGTGATCG CCAACCGCAC CAAGGATCGC TACCTGACCG GCTCCTCGGT CGCGCTGATC
GATGTTCCGG CGAACAACCC CTATAATCCG TTCGGCGTTC CGGCGAGCGT GGCCTATCGC
TTCTCCGACT ATGCGGACGG GCCCTATAAT CGCGGTATCG GCGCGATCCA GGCCTATCGG
ATCGATACCC TGTCCTCGGC GCTGACCCTG GAGCACAGCT TCAGCGACAA GCTTCGTTTA
TCCGCGACGG CCAATTATTT CCGCGAGGAA TCGCATCTGC GCATCCCCAA TGCCTATTCG
GCGGCGGGTC TCGCGGCGGC GATCGCGCGG ACCGGGCCCG ATGCGTTCAA TGCCTTCTGC
AACCGCTGCA ACAATGATGC GCAATTTCAG GGCGTGCTCG TCGGCACCTA TAATGACCAG
ACCAGCGAGC TGATCGATTT CGATACCCGG CTGACCGGTT CGCTGATGGA ACTGGGCGGC
GGCGATCTCG CCTTCGCGGT GGGCGCGGGC TACCGGCATG AGAGCTACGA GGTCCGGCCG
GATCAGCAAC TCGCCCAAGG CTTGCTGATC GACCAGGGGC TCGTCTCCGC GCAGAGCCTG
TCGCGCAAGG TGACCTCGGT CTTCGCCGAG TTGCGCGCAC CGGTGCTCGA AGGGCTCGAG
TTGCAGGCGG CCGCCCGCTA CGAACATTAC AGCGACTTCG GCGGCACCTT CAATCCGCTC
GTCGCCGCCA AATGGGAAGC GGTGCCCGAT CAGCTAATCG TGCGCGCCTC TTATTCGACC
TCGTTCCGCG CGCCCTTCCT GCAGGACCTG ACCAGCGAGC GCACGTCGAG CCAGGTCCCG
GTGTTCGATC CGGTCCGCAA TGCCACCGTC AACGCGGCGG CGATCACCGG TGGCAATCCG
AACCTCGATT CCGAGGACGC CAAGACCTTC AGTGCCGGCG TGGTGATGAC GCCGGAGTTC
GCGCGCGGCC TGCAGGTCAC GATCGACTGG TTCCGGCTGA AGCAGAACAA CCTCGTCATC
GCGCCGAGCC CGCAGTCGGT GATCGCCGGC CTCGCGCCCG GCACCGTCAC GCGCGGCCCC
AATGTCGGCG GCGCGGGGCG CGATACGCTG ATCGAGGCGC TCAAGACCAA CGGCGCCAAC
CGGACGATCA GCGGGATCGA TTTCGCGGCA ACTTACCGGA CCGAGTTCTC CGACAAGGGC
GTGCTCACCC TCGATCTCGC CGGCACGCGC CTGCTCGACT TCAAGGTCGA CATGCGCGAC
GGCAGCGGCC TCGTCGAGCA GGCGGGCAGC TATTCGCCGT TGTTCGGCGG TCTGCCCAAG
TGGAAGCTCG TCGCCGGCCC GACCGTCAAA TATGGCTGGT TCACCACCAA TCTGAAGGTC
CGTCATGCCG GCGGCTACAC CGATCCGGAC TTCTTCGGCA TCCCGCCGCG CAAGGTCGGC
TCGGTCAACT ATATCGACAT CGCGGCGCGC ATCGACCTGG GCGACGACGG CCTGGCCCTG
ATCCCAGGTG GCGAGTTCAC CATCGGCGCC ACCAACCTGA CCAACAAGCT GCCGCCCTTC
GTGCGGAGCG CCAGCCTGTT CTTCGGGGAT GGCGCGGCGT GGGATCGCGG CAATTTCGAT
ATCTCGGGCC GCTTCGTCTA TGCGAGCCTG GGGGTACGCT TCTAA
|
|---|
| Protein sequence | MRRTMLQVLA ASTILTVGWA ASAHAQAVGA APADAAHTAD EEIVVVGSSL RVTEAKIARG
TTPVQIVSAE EMQLSGQKAV ADLVRTQPVF SGTSASAEGQ GLGRSTLNLR GVGDQYTLSL
VNGRRFAVNG AANVGIIPES AIERIEVLTS GASAIYGSDA VAGVVNIVLR KDADGVGGSV
RYGEGTARLA ERQVSAYIGS RGDNGGFILS VDHFERKGLR GKELPTGTNN LARFGGIDFR
SDATNPGRII LPNGDNVILN TDLFGPGTFS NNPASYRPFV YDRDAHDRWD GGIYAISPTK
RTSLMFSGHR DLGPDTKLSL DVIANRTKDR YLTGSSVALI DVPANNPYNP FGVPASVAYR
FSDYADGPYN RGIGAIQAYR IDTLSSALTL EHSFSDKLRL SATANYFREE SHLRIPNAYS
AAGLAAAIAR TGPDAFNAFC NRCNNDAQFQ GVLVGTYNDQ TSELIDFDTR LTGSLMELGG
GDLAFAVGAG YRHESYEVRP DQQLAQGLLI DQGLVSAQSL SRKVTSVFAE LRAPVLEGLE
LQAAARYEHY SDFGGTFNPL VAAKWEAVPD QLIVRASYST SFRAPFLQDL TSERTSSQVP
VFDPVRNATV NAAAITGGNP NLDSEDAKTF SAGVVMTPEF ARGLQVTIDW FRLKQNNLVI
APSPQSVIAG LAPGTVTRGP NVGGAGRDTL IEALKTNGAN RTISGIDFAA TYRTEFSDKG
VLTLDLAGTR LLDFKVDMRD GSGLVEQAGS YSPLFGGLPK WKLVAGPTVK YGWFTTNLKV
RHAGGYTDPD FFGIPPRKVG SVNYIDIAAR IDLGDDGLAL IPGGEFTIGA TNLTNKLPPF
VRSASLFFGD GAAWDRGNFD ISGRFVYASL GVRF
|
|---|
| |