| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_3003 |
|---|
| Symbol | |
|---|
| ID | 5196890 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | - |
|---|
| Start bp | 3289828 |
|---|
| End bp | 3291504 |
|---|
| Gene Length | 1677 bp |
|---|
| Protein Length | 558 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 640582552 |
|---|
| Product | peptidase M28 |
|---|
| Protein accession | YP_001263492 |
|---|
| Protein GI | 148555910 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2234] Predicted aminopeptidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAAACCAG CCTCCGTCGC CGGGGCGCTC GCCGCCTTCG CCCTGCTCGC ATCGCCGCTC
GCCACCGTCG CCGGGACACC GGCCGCCCCG GCCTTCGCGC CGGAGAGCTT CCGCGCCACC
GTCTCCTTCC TCGCCGACGA CCTGCTCGAG GGGCGCGACA CCGGCAGCCG GGGGCACGAG
ATCGCGGCGC GCTACGTCGC CAGCCGGTTC GAGGCGCTGG GGCTCAAGCC CGGCGGCGAC
GACGGCGGCT GGTTCCAGCG GATCACCTTC CAGCAGACCG ATCCCGGCGC GACCCCGGGC
AGCGTCGCGA TCACCGCGCC GAACGGCAAG ACGCAGAGCT GGACGCACGG CACCGACGTG
CTGGTCGGCC TCAACCCCAA CGAGCCGGCG CTCGACATCG CCGCGCCGCT GGTGTTCGTC
GGCTACGGCA TCGAGAATGC GAAGCTCGGC ATCAACGACT ATGCCGGGCT CGACGTGAAG
GGGAAGATCG TCGTCACGCT GCGCGGCTTC CCCCAGGGGC TGCCGAGCGA GGAGGCGGCC
CACGCCTCCG CCACCAAGGC GCAGGCGGCC GACCGGCACG GCGCGATCGG CATGGTCAGC
ATCGGCACGC TGCTGTCGAT GAAGACGCGG CCCTGGGCGC AGAGCGTCCA TTTCGCCGAC
GAGCCGAGCT TCGCCTGGGT CGGCGCCGAC GGCAAGGCGT TCGACGAGGC GCCCGGCATC
CGCATCACCG CCTCGCTCAA CGAACCCGCC GCGCAGGCGC TGTTCGAGGG CGCGTCGCAG
GGCCTCGCCA CGATCCGCGC GATCGCCGAC CAGCCGGGCG GGCGGCCCAA GGGCTTCGCG
CTCAAGACCC GCATCCGCAT CCAGAGCCAG AGCGTCACCA AGCGCGTGAC CAGCCCCAAT
GTCGTCGCGA TCCTGCCGGG CAGCGATCCG GCGCTGAAGG CCGAATATGT CGTGCTGTCG
GCGCATCTCG ACCATATCGG CATCACCCCG CCCAAACCCG GCGGAGCTTC CGGCAATGGG
CCGGACACCG ACCGGATCAA CAACGGCGCG CTCGACAACG CCGCCGGCAT CGCGACGATG
CTGGAGGTGG CGCGCGCCGC CGCCGAGGCG CCGGTCGCGC CCCGCCGCTC GCTGATCTTC
CTCGCCTCGA CCGCGGAGGA GAAGGGGCTG CTCGGCGCCG ACTATTATGC GCGCCACCCG
AGCGTGCCGA TCAAGGCGAT CGTCGGCAAT GTCGACCTCG ACATGCCGCT GCTGCTCTAC
CGCTTCACCG ACGTCACCGC GTTCGGCGCC GACCATTCGA CGCTGGGCCC GATCGTGGCG
AAGGCGGTCG CGCCGATGGG CGTCACCCTG TCGCCCGACC CGATGCCCGC GCAGACCATC
TTCGTCCGCT CCGACCATTA TATGTTCGTC AAGCAGGGCG TGCCCGCCGT CTTCCTGGCC
ACCGGCTTCG CCAATGGCGG CGAGAAGCAT TGGGAGAAAT TCCTGGGCGG CGCCTATCAC
CACCCCGACG ACGACATGGC GCAGAAGATC GACTGGGAGG CCGGCGCCCG CTTCGCCGAC
GCCAATTACC GGATCATGCG CGCCATGGCC GATGCCGACA CGCCGCCGCT CTGGTATGCG
AAGGACTTCT TCGGCGACAC CTTCGCCCCC GACGCGAAGA AGGCGAAGCG GCCGTAA
|
|---|
| Protein sequence | MKPASVAGAL AAFALLASPL ATVAGTPAAP AFAPESFRAT VSFLADDLLE GRDTGSRGHE
IAARYVASRF EALGLKPGGD DGGWFQRITF QQTDPGATPG SVAITAPNGK TQSWTHGTDV
LVGLNPNEPA LDIAAPLVFV GYGIENAKLG INDYAGLDVK GKIVVTLRGF PQGLPSEEAA
HASATKAQAA DRHGAIGMVS IGTLLSMKTR PWAQSVHFAD EPSFAWVGAD GKAFDEAPGI
RITASLNEPA AQALFEGASQ GLATIRAIAD QPGGRPKGFA LKTRIRIQSQ SVTKRVTSPN
VVAILPGSDP ALKAEYVVLS AHLDHIGITP PKPGGASGNG PDTDRINNGA LDNAAGIATM
LEVARAAAEA PVAPRRSLIF LASTAEEKGL LGADYYARHP SVPIKAIVGN VDLDMPLLLY
RFTDVTAFGA DHSTLGPIVA KAVAPMGVTL SPDPMPAQTI FVRSDHYMFV KQGVPAVFLA
TGFANGGEKH WEKFLGGAYH HPDDDMAQKI DWEAGARFAD ANYRIMRAMA DADTPPLWYA
KDFFGDTFAP DAKKAKRP
|
|---|
| |