| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_2971 |
|---|
| Symbol | |
|---|
| ID | 5200715 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | - |
|---|
| Start bp | 3255465 |
|---|
| End bp | 3257099 |
|---|
| Gene Length | 1635 bp |
|---|
| Protein Length | 544 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 640582520 |
|---|
| Product | membrane-like protein |
|---|
| Protein accession | YP_001263460 |
|---|
| Protein GI | 148555878 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG5305] Predicted membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0765391 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGGGCC CGGTCTGGCA TAAGCGGGCG CCGATGACCG CCGCCAAGCT CCCCCGCCCC
GCCCTGTTCC TCGCCGCCGC GCTGATCGCG GGGTTCGCGC TGTGGGCGCG GGCCTGGAAC
CTCGGGGCCG AGCCGATGTG GCTGGACGAG GGCTACAGCG CCTATGCCGC CGCGCAGGGC
TGGGACTTCC TGTGGAACAC CGTCCCCCGC TACGAGACGC ATCCGCCCTT TTATTATTCG
CTGCTGCGCG CCTGGACGCT GGTCGCGGGC GACGGGCTGC TCGCGCACCG CATGCTCGGC
CTGCTGTGCG GGCTGGCGAC GCTGCCGGTC GCGGCGCTGG CGGCGGCACG GCTGGCGCGA
ATCGCCGGGG TCGACCGCGC GCCGGTGGCG CTCGCCGCCG CGGCGCTGGT CGCGGCCTCG
CCGGTGCTGG TCTGGATGAC GCGCGAGATC CGGCCCTATC CGCTGATGAT CCTCGCCTAT
GCCGGCGCGA CCCTCGCGCT GCTCGCGATC GCCGAGCGGC GCGCGGCGGG CCGGCCGCTG
GCGGGGGCCG CCTTCGCCGG CTGGCTCGGC TGCGGGGCGC TGATGCTGTG GCTCCACAAT
CTCGGGCCGC TCTATGCCGG GGCGATGGGC CTCGCGCTGC TCTGCGTCGT CCGGGTGCGG
ACGATGACGC GCGCCGACTG GCTGTGGTTC GCCGGCGGCC ACGCGCTGGC GATCGCGCTG
TGGCTGCCGG CGCTGTTCAT CCTGCTCGAC CAGGCGCCCG AATGGGTCAA GGCGACCTGG
CTCAAATTCT CGACCGTCGA CCTGTGGCGG CGCGCGACCT ACATGTTCAC CGGCCCGCGC
GACGACATCC GCGCGGCGGC GGCGATCCTC ACGCTGTGCG GGGCTGCGCT GCTGTGGCGC
GCGCGCCGGC GCGGGACGCT CGCCGCGCTG CTGATCCTCG CGCTGCTCCC GGTCGCCGTC
TCGCTGCTCG TCTCGGCGCA GGTCACCCCG GTCTTCATCA TCCGGACGAT GACCGCGCTC
GCCGTCCCCG CGCTGCTGCT GATGGGACTG GGGATCGGCT GGGGGTGGCG GCGATATGGA
TGGCTGCTGC CGGTCGGCGC GCTCGCCTGG ATGCTGGTCG GGCAGGTCGG CATCGACATC
GAGTCGCGCG GCCATGTCCG GCGCGACTGG TATGAGGCGG TCGCCTGGCT CGCCCCGCGC
TTCCGGCCCG GCGACGTCGT CCTCGCCTAT CCCAACGAGG GCGCGCTGCC GTTCGACCGG
GCGGTGCGCG ACCGCGGCCT GGCGATGCCG AGCCGCCCGA TCCCGACCGC GATCCCCAGC
CTCGATCCGC CGCCGGGGAG CTGGTACGTC AGCGGCTCGC GCGGCGTCCC CTCGCTCGAC
CGCACGCACC TGCGCGCGAT CGCCCAGGAC CCGGCGACCC GCGCGGTCCC GACCGTCTGG
CTGCTCCGCC TCGGCCCCTG GGCCTATGAC AAGGGCGACG TCTTCCTGGA GGAACTGGCA
CGGGACCGCG TCGAGGTCGG CCGCTTCAGG GACGGCGCGA TCGACATCGT GGGGCTGCGC
CAGAAACAAA AAATCCTCCC TGAGCGCAGC TCGGGGAGGG GGACCGCCGA AGGCGGTGGA
GGGGTGGCGC CGTAG
|
|---|
| Protein sequence | MAGPVWHKRA PMTAAKLPRP ALFLAAALIA GFALWARAWN LGAEPMWLDE GYSAYAAAQG
WDFLWNTVPR YETHPPFYYS LLRAWTLVAG DGLLAHRMLG LLCGLATLPV AALAAARLAR
IAGVDRAPVA LAAAALVAAS PVLVWMTREI RPYPLMILAY AGATLALLAI AERRAAGRPL
AGAAFAGWLG CGALMLWLHN LGPLYAGAMG LALLCVVRVR TMTRADWLWF AGGHALAIAL
WLPALFILLD QAPEWVKATW LKFSTVDLWR RATYMFTGPR DDIRAAAAIL TLCGAALLWR
ARRRGTLAAL LILALLPVAV SLLVSAQVTP VFIIRTMTAL AVPALLLMGL GIGWGWRRYG
WLLPVGALAW MLVGQVGIDI ESRGHVRRDW YEAVAWLAPR FRPGDVVLAY PNEGALPFDR
AVRDRGLAMP SRPIPTAIPS LDPPPGSWYV SGSRGVPSLD RTHLRAIAQD PATRAVPTVW
LLRLGPWAYD KGDVFLEELA RDRVEVGRFR DGAIDIVGLR QKQKILPERS SGRGTAEGGG
GVAP
|
|---|
| |