| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_2966 |
|---|
| Symbol | |
|---|
| ID | 5200462 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | - |
|---|
| Start bp | 3251219 |
|---|
| End bp | 3251932 |
|---|
| Gene Length | 714 bp |
|---|
| Protein Length | 237 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 640582515 |
|---|
| Product | oxidoreductase |
|---|
| Protein accession | YP_001263455 |
|---|
| Protein GI | 148555873 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 0.959173 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0725779 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGACA ATGCTTCGCG CAAGATCCTC GTCCTCGGCG GCAGCCGGGG GATCGGCGCC
GCGCTGGTCC GCCGTTTCGC CGGCGCCGGC GACCATGTCG TCTTCAGCTA TGCCGGATCG
GCCGACGCCG CCGCCGCGCT CGCCGCGGAG ACCGGCGCCC GCGCCGTCCG GGTCGACAGC
GCCGATCGCG ACGCGCTGGT CGCCGCGGTC GCGGCGGAGG GGCCGGTCGA CGTGCTGCTG
GTCAATGCCG GCACGCTCGC GCTCGGCGAT CCGCTGACGC TCGACGCCGA CGCGGTCGAC
CATATGATCG ACGTCAACGT CCGCGCGCCC TACCACGCCG CGGTCGAGGC CGCCCGGACG
ATGCCCGGCG ACGGCCGCAT CCTCGTCATC GGGTCGACCA ACGGCGACCG CATGCCCTTC
GCCGGGGGCG CCGCCTATGC GATGACCAAG TCGGCGATCC AGGGCATGGT GCGCGGCCTC
GCCCGCGACC TGGGCGGTCG CGGCATCACC GTCAATGCGA TCCAGCCGGG GCCCACCGAC
ACCGACATGA ACCCCGCGAG CGGCCCGATG GCCGAGACGA TGCACGGCTT CATGGCGATC
AAGCGCCATG TCCACGCGTC GGAGATCGCC GACTATGCCG CCTTCCTCGC CAGTCCCTCG
GCGGCGATGA TCACCGGATC GATGCAGACG ATCGACGGCG GCTTCGGGGC TTGA
|
|---|
| Protein sequence | MSDNASRKIL VLGGSRGIGA ALVRRFAGAG DHVVFSYAGS ADAAAALAAE TGARAVRVDS
ADRDALVAAV AAEGPVDVLL VNAGTLALGD PLTLDADAVD HMIDVNVRAP YHAAVEAART
MPGDGRILVI GSTNGDRMPF AGGAAYAMTK SAIQGMVRGL ARDLGGRGIT VNAIQPGPTD
TDMNPASGPM AETMHGFMAI KRHVHASEIA DYAAFLASPS AAMITGSMQT IDGGFGA
|
|---|
| |