| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_2879 |
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| Symbol | |
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| ID | 5196158 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | - |
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| Start bp | 3159137 |
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| End bp | 3160912 |
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| Gene Length | 1776 bp |
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| Protein Length | 591 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 640582429 |
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| Product | hypothetical protein |
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| Protein accession | YP_001263369 |
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| Protein GI | 148555787 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1287] Uncharacterized membrane protein, required for N-linked glycosylation |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 35 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.045909 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTGATA CCTCCCTCTC TCCCCGCCGC CTGATCCTCG GCATCGCCGC GCTCTGGGCG
CTCGCGGCGA CGGTGCTGCT GGCCGTCGCA TACAGCCGCA TCGCGCCGCT CGAAATGTGG
GACCCCGACG ATTATCTGCG GCTCCAGCAG GTCCGCGACT GGCTGGGCGG GCAGAGCTTC
TTCGACGTCA CCCAATATCG CATCGATCCG CCGCACGGCG TGCCGATGCA CTGGTCGCGG
ATCGTCGACC TGCCGATCGC CGGGTTGATC CTGTTGCTCC AGCCGCTGCT CGGCGGGGCG
AGCGCCGAGC GCGTCGCCGC CAGCGCGGTG CCGCTGATCA CCTTCGCGGG GACGCTGTCG
GCGGTCGCGC TCGCCACCGC GCGGCTCGCC GGCCGGCGCG CGGCGCTGCT CGCGGCGACG
CTCGCCGCGA CCGCGCCGAT GATCCTGTTC CACGTCCTGC CGATGCGGAT CGACCATCAT
GGCTGGCAGA CCGCGCTGGG CCTGTTCGCG GTCGCCGCCT GCTTCGACCG CCGGCCGCTG
CGCGGCGGGA CCATGGGCGG CATCGTCACC GCGCTGTGGC TCGCCATTTC GCTCGAAGCG
CTGCCGGCGG CGGCGGCGAT CGCGCTGCTG CTGGCGCTGC GCTGCCTGTG CTGGGGCGAG
ACCGAGCGGC TCCGCGCCTT CGCGGCCGCA TTCGGCGGCG CCAGCCTGCT CCTGTTCGCC
GGCTTCCACG GGCGCGCCGG CTGGGGCCAA TATTGGTGCG ACGCGGTCAG CCCCGCCTGG
TTCGGGCCGC TGATCGTCAC GCCGATCACC GCCGCGATCG GGCTGCGGAT CGCCACGCGG
CGCGGCGTCG GCGCGCGGAT CGCGGCGCTG GTCCTGGCCG GGGCGCTCGG CGTCGCGCTG
CTCGCGGCGA CCGCGCCCGC CTGCCTCGCC GGGCCGTTCG CCACGCTCGA TCCGGTGTCG
CGCCACTTCT GGTACGACAA TGTCCTCGAA GGGCTGCCCG TCTGGCGGCA GCCGGCCGAC
AATGCGGCGA TGCTGATCGG CTTTCCGCTG GTCGGCCTGC TCGGCACGCT CGCCGCCTGG
CGCAGCGCGC GGACCAGCGC CGAGGCGCGC AACTGGCTGA CCATGGCCGC GATCCTCGCC
GCCGCCTTCG CGGTCGCGCT GCTCGTCCAG CGCGCCGGCG GCTTCGCCCA TGGCTGCGCC
CTGCCCGGCA CCGCCTGGCT GCTCGCCCGG CTGCTGGGCG CGATCGACCG CTGGCGGCGC
ATGCCGGCCC GCGTCGTCGC CTCGGCCACG GCGTTCCTCG CACTGTCGCC GATCGGAGCG
GTCGCGGCGG GCGTGCTGGT CGTCGACCGC ACCGCCCCTG CCACGAACGC CGCCAAGGCG
ACCGCGCCGG TCCATTATTG CTTCGCCCCC TGCACCAGCC TCGATCCGCT CGCACGGCTG
CCGCGCAGCA CCATCCTGAC CGGGCTCGAC CTCACCCCGC GCCTGCTGAT CGCCACGCCG
CACAGCTATG CCGGCAGCGG CCATCACCGC GATCCGCAGG CGATCCGCCG GGTGATCCTG
GCCTTCACCC AGCCGCCCGA GGTCGCCCGC CGCATCATGG CGACGCACGG CATGGCCTAT
CTGCTGATCG ACCCCACCGG CACCGAGACC AACCTCTATG CCGGGGCGTC GCACGACGGG
CTCGCGGCCC GGCTGCTGCG CGGCGAAGTG CCGGCCTGGC TGGAACCGGT GCCGCTGGAG
GGCAGTACGC TGCGGCTGTG GCGGCGACGG TCCTGA
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| Protein sequence | MTDTSLSPRR LILGIAALWA LAATVLLAVA YSRIAPLEMW DPDDYLRLQQ VRDWLGGQSF
FDVTQYRIDP PHGVPMHWSR IVDLPIAGLI LLLQPLLGGA SAERVAASAV PLITFAGTLS
AVALATARLA GRRAALLAAT LAATAPMILF HVLPMRIDHH GWQTALGLFA VAACFDRRPL
RGGTMGGIVT ALWLAISLEA LPAAAAIALL LALRCLCWGE TERLRAFAAA FGGASLLLFA
GFHGRAGWGQ YWCDAVSPAW FGPLIVTPIT AAIGLRIATR RGVGARIAAL VLAGALGVAL
LAATAPACLA GPFATLDPVS RHFWYDNVLE GLPVWRQPAD NAAMLIGFPL VGLLGTLAAW
RSARTSAEAR NWLTMAAILA AAFAVALLVQ RAGGFAHGCA LPGTAWLLAR LLGAIDRWRR
MPARVVASAT AFLALSPIGA VAAGVLVVDR TAPATNAAKA TAPVHYCFAP CTSLDPLARL
PRSTILTGLD LTPRLLIATP HSYAGSGHHR DPQAIRRVIL AFTQPPEVAR RIMATHGMAY
LLIDPTGTET NLYAGASHDG LAARLLRGEV PAWLEPVPLE GSTLRLWRRR S
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