| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_2862 |
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| Symbol | |
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| ID | 5199441 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | - |
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| Start bp | 3143813 |
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| End bp | 3145084 |
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| Gene Length | 1272 bp |
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| Protein Length | 423 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 640582412 |
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| Product | diaminopimelate decarboxylase |
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| Protein accession | YP_001263352 |
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| Protein GI | 148555770 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0019] Diaminopimelate decarboxylase |
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| TIGRFAM ID | [TIGR01048] diaminopimelate decarboxylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.0197535 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.0614086 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGACCATT TCAACCTGAA GGACGGCGTC CTCCACGCCG AGGACGTGGC GCTGCCCGCG
ATCGCCGAGG CGGTGGGGAC GCCGGTCTAT GTCTATTCGA CCGCGACGAT CGAGCGGCAT
GTCGCGGTGT TCAAGGCCGC GCTCGCCGCA GTCGAATCGG GGCCCGAGGG GCCGCTGATC
GCCTTCGCGG TGAAGGCCAA TCCCAACCGC GCGGTGCTGG CGACGCTCGC CAGGGCCGGG
CTCGGCGCCG ACGTGGTGTC GGGCGGCGAA CTGCTGCGCG CGCGCGCCGC CGGCATCCCC
GCCGACAAGA TCGTCTTCTC GGGCGTCGGC AAGACCGAGG CGGAGATGCG GCTCGGCCTC
GAACAGGGCA TCTTCCAGTT CAACATCGAA TCCGAGCCCG AGGCCGAGAT GCTCTCCGAG
GTCGCGGCGG CGACGGGCCG GCGCGCGCCG GTCGCCTTCC GCATCAACCC GAACGTGATC
GCGGGCACCC ACGCCAAGAT CTCGACCGGC GGGTCGGAGG ACAAATTCGG CGTCGCCTAT
GACCGCGCGA TCGCCGCCTA TGCGCGCGCG GCCGAGCTGC CCGGGCTCGA CGTCCGCGGC
GTCGCGGTCC ACATCGGCAG CCAGCTCACC GACCTCGGCC CGTCGCGCGC CGCCTTCGAG
AAGATCGGCG CGCTGATCGC CGAACTGCGC GCCGCCGGGC ACCGCATCGT CACCGCCGAC
CTGGGCGGCG GCCTCGGCGT CCCCTATGAC CCCGCCAAGC CGGTGCCGCC GCTGCCCGAC
GCCTATGGCG CGATGGTGCG CGAGGTGACG GCGGGCTGGA ACACGCGGCT GGTCTTCGAG
CCCGGCCGGG TGATCGTCGG CAATGCCGGG GTGCTGCTGT CGCGGGTGAT CCGGGTCAAG
CCCGGCGTCA CCGATCCGTT CGTCATCGTC GACGCGGCGA TGAACGACCT GATGCGGCCC
AGCCTCTACG ACGCCTGGCA CGATATCCGC GCGGTTACGC CGAACGGTGC GGCAATGACG
GCCAACATCG TCGGCCCCAT CTGTGAAAGC GGCGACAGTT TCGCCAAGAA GCGGGCGATG
GACGCCGTCG GTCCCGGCGA CCTCGTCACC TTCATGACGG CGGGAGCCTA TGGGGCGACG
ATGGCCAACA CCTATAACTC GCGCGCGCTG ACGCCCGAGG TGCTGGTGAA CGGGGACCAA
TGGGCGGTCG TCCGGGAGAG GCAGCCGATC GAGGCGCTGA TCGCGGCGGA CAAGCTCCCG
CCGTGGGTGT GA
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| Protein sequence | MDHFNLKDGV LHAEDVALPA IAEAVGTPVY VYSTATIERH VAVFKAALAA VESGPEGPLI
AFAVKANPNR AVLATLARAG LGADVVSGGE LLRARAAGIP ADKIVFSGVG KTEAEMRLGL
EQGIFQFNIE SEPEAEMLSE VAAATGRRAP VAFRINPNVI AGTHAKISTG GSEDKFGVAY
DRAIAAYARA AELPGLDVRG VAVHIGSQLT DLGPSRAAFE KIGALIAELR AAGHRIVTAD
LGGGLGVPYD PAKPVPPLPD AYGAMVREVT AGWNTRLVFE PGRVIVGNAG VLLSRVIRVK
PGVTDPFVIV DAAMNDLMRP SLYDAWHDIR AVTPNGAAMT ANIVGPICES GDSFAKKRAM
DAVGPGDLVT FMTAGAYGAT MANTYNSRAL TPEVLVNGDQ WAVVRERQPI EALIAADKLP
PWV
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