| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_2751 |
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| Symbol | |
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| ID | 5197981 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | + |
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| Start bp | 3035693 |
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| End bp | 3039049 |
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| Gene Length | 3357 bp |
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| Protein Length | 1118 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 640582304 |
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| Product | polysaccharide deacetylase |
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| Protein accession | YP_001263244 |
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| Protein GI | 148555662 |
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| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis
[R] General function prediction only |
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| COG ID | [COG0726] Predicted xylanase/chitin deacetylase
[COG1215] Glycosyltransferases, probably involved in cell wall biogenesis
[COG3858] Predicted glycosyl hydrolase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.880093 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATAGCC GGCCGATCTT CTACGATGCC TCGGGCCGCC GCCGGCGCCG CTTCGCGCTG
GCGATCGCGG CGTTCGCGCT GCTGCTGCTG CTGTCGGCGG TCGCCTTCTT CGGGTCGATC
ATCCGCGTCA CGCCGCAGCC GCCGCTGCCG TTCGAGGTCG AGCGGCCCGC CATCGCCCCG
CTCAAGGCCG CCGACCATTC GCTGGTCGGC GCCAGCGCGC GCAAGGTCCG CCACATGTGG
CGCGATTTCC GCCGGCTGCT GGCGCACGGC ACGGCCGGCG CCGGCATGCC GCCGACCGCC
TATGCCTTCC ACGCGCCATG GGACGACGCC TCGGCCGCGT CGCTGGCGCG CCATGTCGAC
GACATCGACT GGCTGATCCC GGGCTGGATC TCGATCACCG GCCCGGACCA CAAGGTGACG
AGCTTCCCCG ACGCGCGCGG CAAGGCGATC ATCAGCCATG CCCATCGCCG GCCGAAGCTG
ATGCCGATGA TCCAGAACGC GCTCGGCGGG GCGTGGGACG GGCCCGGCAT CGCCGCGCTG
CTGCGCGATC CGAAGGCGCG GGCGGCGACG CTCGACCGGG TCGCGGCGCT GCTCGCCGCG
AACCAGGCAA GCGGGGTCTT CTTCGATTTC GAGGAGCTGC CCGCCGACGC CCATCCCGCC
TATCGCGCCT TCCTGACCGA GGCGCGCCGC CGCCTGCCCG GCATGCAGAT CGCCATCGCG
GTGCCCGTCG CCGACGCGAC CTGGGACCTG AAGGCCTATG CGCGGGTCGC CGACAAGCTG
TTCCTGATGG CCTATGACGA GCATTCGGAA CCCGGCGACC CGGGGCCGAT CGCCTCGCGC
CCCTGGTTCG CCGATTCGGT CGCGCGCGCG GTGCGCGGCC TGCCGCCCGA CCGGGTGGTA
GTGGCGCTCG GTTCCTACGC CTATGACTGG GAGAAGGGCG GCGACACCAT CGCCCATTCG
GTCGAGGACG TCTGGCTCGC CGCGCACGAC AGCGGCGTGG TGCCGCGCTT CGACCCGGCC
AGCGGCAACA GCAGCTTCGC CTATCTCGAG GGCGGCGTCC GCCACGACAT CTGGCTGCTC
GACGCCGCCG CGATGCACGG CCAGATCGCG ACGCTGCGCA CGCTCGGCCT CCACCAGGTC
GCGCTGTGGC GGCTGGGGAC CGAGGACCCG TCGGTCTGGA CGATGTTCGG GCGCGGGGCG
GGGGGCGGAC GCCGCCTGCC CTCGGCGCAG GCGATCGAGG ACATCCCCGC CGGCAACAAT
GTCGATATCG AGGGGGCGGG CGAGATATTG CGGATCGGCG CGGTGCCGGT GCCCGGCCAT
CGCAGCGTCA TCACCGATCG CGCCGGGATG ATCACCGCCG TCCGCTTCGA CCGGTTGCCG
ACCCCCTATC AGATCGAGCG CACCGGCTAT CGGCCGAAGC TCGTCGCGCT GACCTTCGAC
GACGGGCCCG ATCCGGTCTG GACCCCGAAG ATCCTCGACA TCCTCAAGGC CGAGAAGGTC
TCCGCCACCT TCTTCATCGT CGGCGAGAAC GCGCTGACCC AGCGGTCGCT GCTCGAACGG
CTGGTGGCCG AGGGGCACGA GGTCGGCAGC CACACCTATA CCCATCCCAA TCTCGCCCAG
GCGACCGCCG CGCAGACCGC GCTTGAGCTC AACGCCAACC AGCGGCTGTT CCAGGCCTAT
ACCGGCCGAT CGCTGCGGCT GTTCCGCGCG CCCTATTTCG GCGACGCCGA GCCGACCACC
GCCGACGAGA TCGTGCCGGT CGAGGAGGCG CAGCGGCGCG GCTATCTGTC GGTCGGCCTG
CATGTCGACC CCGACGACTG GAAGCGGCCC GGCGTCGCCG AGATCGTCCA GCGGACGATC
GACGGGGTCG AGAGCGGCAG CCCCGACTTC TCCGCCAACG TCGTCCTGCT CCACGATTCG
GGCGGGGACC GGGCGCAGAC CGTCGCCGCG CTGCCGCTGG TGATCAACGC GTTGCGCGCG
CGCGGCTACC AGCTCGTGCC CGTCTCGGTG CTCGCCGGGC TGTCGCCGGC CACGGTCAAC
CCGCCGATCT CGGAGGGCGA CCGGCTGGCG GCGCAGACCG ACCTGGCGCT GTTCAGCACG
CTCGGCTGGA TCACGATCGC GATCAAATGG CTGTTCATCG TCGCGATCAG CCTGGGCATC
GCCCGCGCCG TGCTGCTCTC CGGCCTCGCG CTGGTCCAGG CGCGGCGCGA GGCCCGCACC
GTCTTCCCGC CGGTCGATCC CGATCGCTTC GTCACCGTGC TGATCCCCGC CTATAACGAG
GAGCGGGTGA TCGAGCGGTC GGTGCGGCGC GTGCTCGACA GCCGCGACGT GCGGGTCGAG
GTGATCGTCA TCGACGACGG GTCGAAGGAC CGGACCAGCG CGGTCGTCGC CGAGGCCTTC
GCCGACGAGC CGCGCGTCCG GCTGCTGACC GTCGAGAATG GCGGCAAGGC GCGCGCGCTC
AACCGCGGGC TCGAACTGGT CCAGGGCGAG ATCGTCATCG CGCTCGACGC CGATACCCAG
TTCGAGCCGG CGACGATCGC CCGGCTGGCT CGCTGGTTCG ACGATCCGGC GCTCGGCGCG
GTCGCCGGCA ACGCCAAGGT CGGCAACCGC ATCAACCTCG TCACCCGCTG GCAGGCGCTC
GAATATATCA CCGCGCAGAA TCTGGAGCGG CGCGCGCTCG CCCGGCTGAA CGCGATGACG
GTGGTGCCCG GCGCGGTCGG CGCGTGGCGG CTCGCCGCGA TCCGCGCGGT CGGCGGCTAT
CCGCCCGACA CGCTGGCCGA GGACCAGGAC CTGACGATCG CGATCCAGCG CGCCGGCTGG
GGCGTCCATT ACGACCAATA TGCCGTCGCC TGGACCGAGG CGCCCGAAAG CGTGCGCGCG
CTCGCCAAGC AGCGCTTCCG CTGGGCCTAT GGCACGCTGC AATGCCTGTG GAAGCATCGC
CGGGTGATGG CGAGCGGCGA GCCGCGCGGC CTCGCCCGCA TCGGCCTGCC GCAGGCGGTG
CTGTTCCAGA TCCTGCTCGC CGCGATCTCG CCGGTGATCG ACCTCGCGCT GATCGTCAGC
CTGGTCGCGA CCTGGTTCGA AGTGCAGGCG CATGGCTGGG CGCAGAGCAG CACCGACATC
GACCGGATGC TCGCCTATTG GCTGATCTTC ACGGCGATCG ACCTGCTCGC CGCCTTCATC
GCCTTCGCGC TCGAACGGCG GGAGAAGTGG CGGCTGCTGT GGCTGCTGAT CCCGCAACGC
ATCGGCTATC GCCAGATCAT GTACTATGTC GTTCTCAAGG CGCTGGCGCA GGCGCTGCGC
GGGCCCCGGG TGGGCTGGGG CAAGCTCGAA CGATCGGGCC GGGTGGCGAC GGGCTGA
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| Protein sequence | MDSRPIFYDA SGRRRRRFAL AIAAFALLLL LSAVAFFGSI IRVTPQPPLP FEVERPAIAP
LKAADHSLVG ASARKVRHMW RDFRRLLAHG TAGAGMPPTA YAFHAPWDDA SAASLARHVD
DIDWLIPGWI SITGPDHKVT SFPDARGKAI ISHAHRRPKL MPMIQNALGG AWDGPGIAAL
LRDPKARAAT LDRVAALLAA NQASGVFFDF EELPADAHPA YRAFLTEARR RLPGMQIAIA
VPVADATWDL KAYARVADKL FLMAYDEHSE PGDPGPIASR PWFADSVARA VRGLPPDRVV
VALGSYAYDW EKGGDTIAHS VEDVWLAAHD SGVVPRFDPA SGNSSFAYLE GGVRHDIWLL
DAAAMHGQIA TLRTLGLHQV ALWRLGTEDP SVWTMFGRGA GGGRRLPSAQ AIEDIPAGNN
VDIEGAGEIL RIGAVPVPGH RSVITDRAGM ITAVRFDRLP TPYQIERTGY RPKLVALTFD
DGPDPVWTPK ILDILKAEKV SATFFIVGEN ALTQRSLLER LVAEGHEVGS HTYTHPNLAQ
ATAAQTALEL NANQRLFQAY TGRSLRLFRA PYFGDAEPTT ADEIVPVEEA QRRGYLSVGL
HVDPDDWKRP GVAEIVQRTI DGVESGSPDF SANVVLLHDS GGDRAQTVAA LPLVINALRA
RGYQLVPVSV LAGLSPATVN PPISEGDRLA AQTDLALFST LGWITIAIKW LFIVAISLGI
ARAVLLSGLA LVQARREART VFPPVDPDRF VTVLIPAYNE ERVIERSVRR VLDSRDVRVE
VIVIDDGSKD RTSAVVAEAF ADEPRVRLLT VENGGKARAL NRGLELVQGE IVIALDADTQ
FEPATIARLA RWFDDPALGA VAGNAKVGNR INLVTRWQAL EYITAQNLER RALARLNAMT
VVPGAVGAWR LAAIRAVGGY PPDTLAEDQD LTIAIQRAGW GVHYDQYAVA WTEAPESVRA
LAKQRFRWAY GTLQCLWKHR RVMASGEPRG LARIGLPQAV LFQILLAAIS PVIDLALIVS
LVATWFEVQA HGWAQSSTDI DRMLAYWLIF TAIDLLAAFI AFALERREKW RLLWLLIPQR
IGYRQIMYYV VLKALAQALR GPRVGWGKLE RSGRVATG
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