| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_2407 |
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| Symbol | |
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| ID | 5196949 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | - |
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| Start bp | 2674916 |
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| End bp | 2676721 |
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| Gene Length | 1806 bp |
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| Protein Length | 601 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 640581953 |
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| Product | lipopolysaccharide biosynthesis protein |
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| Protein accession | YP_001262904 |
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| Protein GI | 148555322 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3206] Uncharacterized protein involved in exopolysaccharide biosynthesis |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.3542 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGCCATGCC GGCGTGAAGG ACCAGTTCTG CTTCTTCGGC GACCGGTCGG TCAGCGCCTC
GGGCGCGGGC GGCACGGTCG AGCAGACCCA GCTCGGCGTC AACTATCGCC GCCAGATGAC
CGAGCGGGTC GGCGTGAGCT GGACCGGCAG CTATGTGCGC AGCAAGTCGC AGTCGACGCT
GCTCGGCGGC ACGCGGCAGT TCGTCACCGG CGTCGCCGGC GTCGACTGGC GGGTGTTCCG
CAGCCTCACC GTCGGGGCCC AGGGCCGCTA TCGCGACGTC TATGGCGCGG GTCTCCCGAT
CAAGGCCGAC ATCGGCGGAG AAGTCTTCGC CCGGCTGCAG CTGACGGGCC GCTGATGAGC
GATCCGGTCG ATCCGATCGG CGACGTCGAG CTCGCGGACG GCCTGCTGGC CTATCTGCCG
CAGATCCTCG TCCAGCGCCG CTGGCTCGTG CTGATCCCGT TCATCGTCTG CGCGGGGACG
GGCATCGGCC TCGCCTACGG CCTGCCCGCG CATTACCAGT CCTCCGCCAC CGTCGTCGTC
GAATCGAAGG AACTGCCCGA GGCGATCGCC GCCGCGACGG TCAACGACCT GATCGACCAG
CGGATCGCCC GCATCAAGCA GCAGATATTG AGCCGCCCGG GCCTGATCGA GCTGATCCAG
CAGAACGACC TCTACCGGTC GCAGCGCCGC TCCAGCTCGC TCTCCGCGAT CATCGACATG
ATGCGCGACG CGACCGCGAT CACGCCGGTG ACGGCGGGCA TCGACAAGCT CGCCGAACGG
CGCGGCACGT CGAACACCAT CGCCTTCTCG GTCGCCTTCA CCTATTCGGA CCCGGCCAAG
GCGCAGGCGG TGACGCAGCA GTTCACCGAA AGGCTGCTCA AGCTCGACAG CACCCAGCTC
GCGGCGCAGG CCGACGCCAC CGTCGGCTTC CTGCGCGACC AGGCCGGCCA GATCCAGAGC
CAGATCGGCG AGATCGAGGG CAAGATCGGC GAGATCAAGG CGCGCAACGG GCTGGCGCTG
TCGCGGATCG GCGGCTTCAT CCCGTCGACC GCCAATTACG ACGTGCAGAT ATCGCAGCTC
CAGCGCGAGA ATGGCGAGCT GCAGGCCCGG CTCAACAGCG GCAGCACCAA CGCCGACGAG
CGCGTGTCGC AGGCCGAGGC GGGGCTCGCC TCCGCCCAGG CGCTCTATTC GGACAACCAT
CCCGACGTGA TCGCCGCGCG GCAGCGACTG ACCGAGGCGC GCGCGGCGGC CAAGGCCAAT
ACCGGCCCAC GCAACAACCC GGCGGTCATG GCGCAGATCG CCGCGAACAA CCGCACCATC
GCCTCGCTCA ACAGCGCCAA GTCGGCCGAC ATGTCGCGGG CCAGCGCCGC CGTCTCGGCG
CAGAGCGCCG CGCCGGTGAT CGAGGAGAGC ATCCGCCAGC TCGAGGCCAA GGCCGACGGC
CTGCGGTCGA ACTACGATCG CCTGTCGGGC AATCTTCTGG CGGCCGAGGC GGCGCAGAAG
ATGGCGGCCG AGCAGCGCGG CGAACGGCTG GTGCTGGTCG ATCCGCCGAC CCTGCCCGAC
GAACCCAATT CGCCCAATCG CGGGCTGCTG ATCATCGGCG GCTTCGCGGT CGGCATCACC
GTCGGCCTCG CCCTGGCGCT GCTCGTCGAG CTGCTGCGCC GTCCGATTCG CGGCGCGGGC
ACGCTGCAGT CGCTGCTCGG GGTCGGCCCG CTGGTGGTGA TCCCGACCCT CAAGTCGAAG
CAGCGCGGCA AGGCCCGCCG GCGCAAGGGC GGCTTCCTGT GGCGCCGCCG GGCGGCCCGG
ACATGA
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| Protein sequence | MPCRREGPVL LLRRPVGQRL GRGRHGRADP ARRQLSPPDD RAGRRELDRQ LCAQQVAVDA
ARRHAAVRHR RRRRRLAGVP QPHRRGPGPL SRRLWRGSPD QGRHRRRSLR PAAADGPLMS
DPVDPIGDVE LADGLLAYLP QILVQRRWLV LIPFIVCAGT GIGLAYGLPA HYQSSATVVV
ESKELPEAIA AATVNDLIDQ RIARIKQQIL SRPGLIELIQ QNDLYRSQRR SSSLSAIIDM
MRDATAITPV TAGIDKLAER RGTSNTIAFS VAFTYSDPAK AQAVTQQFTE RLLKLDSTQL
AAQADATVGF LRDQAGQIQS QIGEIEGKIG EIKARNGLAL SRIGGFIPST ANYDVQISQL
QRENGELQAR LNSGSTNADE RVSQAEAGLA SAQALYSDNH PDVIAARQRL TEARAAAKAN
TGPRNNPAVM AQIAANNRTI ASLNSAKSAD MSRASAAVSA QSAAPVIEES IRQLEAKADG
LRSNYDRLSG NLLAAEAAQK MAAEQRGERL VLVDPPTLPD EPNSPNRGLL IIGGFAVGIT
VGLALALLVE LLRRPIRGAG TLQSLLGVGP LVVIPTLKSK QRGKARRRKG GFLWRRRAAR
T
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