| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_2390 |
|---|
| Symbol | |
|---|
| ID | 5198727 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | - |
|---|
| Start bp | 2653813 |
|---|
| End bp | 2655453 |
|---|
| Gene Length | 1641 bp |
|---|
| Protein Length | 546 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 640581936 |
|---|
| Product | GMC oxidoreductase |
|---|
| Protein accession | YP_001262887 |
|---|
| Protein GI | 148555305 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCATATCG ATCTCGATCA TGGCGGGCCC GACGGCATGG CCGCGGACGT CGCCGTCATC
GGCGCCGGCG CCGCCGGCAT CACCATCTGC CGCCGCCTGC TGGCGGAAGG GCTGTCGGTC
ATCCTGCTCG AAAGCGGCGG CTTCGATCAC GAGCCGGGTC CCTCGGCGCT CAACGCCGGC
GAGAATGTCG GCGAGGACTA TTATGCGCTG GAGGATGCGC GGTTGCGCTT CTTCGGCGGC
ACCACCGCGA TCTGGGGCGG GCGCTGCGCC GAGTTCGATC CGATCGATTT CGAGCGCCGT
CCCTGGATTC CCCATTCGGG CTGGCCGTTC GGCCATGCGG AGATCGCGCC CTATTATGCC
GAGGCGCGCG CTGCCTTCGG CCTGCCGCGC GTCCTGCCCG ATCTCGCCGA GGCGCTCGAT
CCGCTGCTGC CCGCCTTCGC CGATCATGAG CTGGCGACGC CGGCCTGGCT GTTCGACGAG
CGCTTCGACC GGTTCAGCCA TGCCAACAGT CGCGACCTGA TCGATCATCC GCGCTGCACC
GTCGTCACCC ACGCCACGGT GCGGGAGATC ATGGCGGCGG GCTCGGCGCG GGGCGTCGAG
CGGCTGCTGG TCCGCAACCT GGCGGGCCGG CGGCTGGCCG TCACCGCGCG CCATTATGTG
CTGGCGGCCG GCGGGATCGA GAATCCGCGC CTGCTGCTCG CCTCGCGGTC GGTGATGCGC
TGCGGGCTCG GCAACGGCCA CGACCAGGTC GGCCGCTATT TCATGGAGCA TCCGCACGCG
CGCGGCGGCA AGGTGGTCGG CGGCGCGAGC TGGGCGCTGC TGCGCGCCTT CGGCCGGCAC
AGGGTCGGCG CGCTCTCGGT CGCGCCGCTG ATCGCCGCGG CGCCGGCGCT GCAGGCGCGC
GAAGGGCTGC TCAACACCTC GCTGACCCTC GCGGGCCGGC GGCCGGCGGA AGGACGGCAG
GCGCTGCTGC TCGCCGCCTA TGAGCGGATC AAGCACGACA CCGCCCCGAC GGCGCGCGGC
CGCCATCTGT GGAAGATGAT GAAGCGGACC GTGAACAGCC TCCAGAAGAT CGTCGATCCG
GCCCGCCCCT GGGCGCTGGA GAAGCTGGGC CTGACCGATC TGGCGCTGGT GGTGCGGGCC
GAACAGGCGC CCAATCCCGA CAGCCGGGTG AAGCTGGGCG ACGTGCTCGA CGCCACCGGC
ATGCCGCGCG CGCAGCTCGA CTGGCGGACC AGCGCGATCG ACGTCGACAG CGTCCGGGGG
CTGGTCAGCG CGCTCGGCCG CGAGCTGCGG CGGCTCGGCC TCGGCAAGGT CGAGCCCGCC
GCCTGGCTGG CCGAGGAGCC GCGCCGCTGG ACCACCGATC CGCTGATCAG CACCCATCCG
ATCGGCGGCT ATCACCATAT GGGCACCACC CGCATGGCCG ACGATCCGCG CCGCGGCGTC
ACCGACGGGC AGGGGCGCGT CCATGGCGTC GACAATCTCC ATGTCGCCGG CAGCTCGCTG
TTCCCGACCT CGGGCTGGGC CAACCCGACA CTGACGATCG TCGCGCTGGC GATGCGCTCC
GCCGACCGGA TCGCCGACCG GCTGCGCGCC GCGCCCGTGC CGTCGCTCCA CACGCTGAAG
CCGCGCATCG CCGCAGGCTG A
|
|---|
| Protein sequence | MHIDLDHGGP DGMAADVAVI GAGAAGITIC RRLLAEGLSV ILLESGGFDH EPGPSALNAG
ENVGEDYYAL EDARLRFFGG TTAIWGGRCA EFDPIDFERR PWIPHSGWPF GHAEIAPYYA
EARAAFGLPR VLPDLAEALD PLLPAFADHE LATPAWLFDE RFDRFSHANS RDLIDHPRCT
VVTHATVREI MAAGSARGVE RLLVRNLAGR RLAVTARHYV LAAGGIENPR LLLASRSVMR
CGLGNGHDQV GRYFMEHPHA RGGKVVGGAS WALLRAFGRH RVGALSVAPL IAAAPALQAR
EGLLNTSLTL AGRRPAEGRQ ALLLAAYERI KHDTAPTARG RHLWKMMKRT VNSLQKIVDP
ARPWALEKLG LTDLALVVRA EQAPNPDSRV KLGDVLDATG MPRAQLDWRT SAIDVDSVRG
LVSALGRELR RLGLGKVEPA AWLAEEPRRW TTDPLISTHP IGGYHHMGTT RMADDPRRGV
TDGQGRVHGV DNLHVAGSSL FPTSGWANPT LTIVALAMRS ADRIADRLRA APVPSLHTLK
PRIAAG
|
|---|
| |