| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_2372 |
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| Symbol | |
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| ID | 5199292 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | - |
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| Start bp | 2635266 |
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| End bp | 2636927 |
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| Gene Length | 1662 bp |
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| Protein Length | 553 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 640581918 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001262869 |
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| Protein GI | 148555287 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4783] Putative Zn-dependent protease, contains TPR repeats |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 0.639199 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCGACCCC GATGGGTTCT GGCTGCCCGT CATCGGGCGG AAAGGGACGG CTGGCAAGAG
ATGGCTTCGG GCTTGGCACG CTTCATCGCG GCGGCGGCGC TGCTGATGCT GGTCGCCTGC
GGCTCGGCCG AGGAGAAGGC GTCGAAGGCG GCGGCGCGCT ACGACGTCTA TTATGCCCGG
CGCGATTTCA CCTCCGCGCG GATCGAGATC AAGCGCGCGC TGGCCGCGCA GGACGACATC
CCCGAATATT GGGCGCGGCT GGCGCGGGTC GAGCTGGCGA GCGGACGGCT GCTCGAAGCC
TATGAGGCCT ATGCCCGGCT GGTCGAGCTC GACCCGAACG ATGCCGAGGC GATCCAGGCG
ATGGCCGAGC TGTCCTATTC GGGCGGCTCC TATGACGATG CCGAGCGGCT GGCCGACCAG
ATGCTGGAGA AGCAGCCGCG CTCGCTGCGC ATGCTGCTGG TCAAGGGATC GGTCGCGGCG
GCGCGGCACG ACCTGCCCGC CGCCCGCGCG ACCGCCGACC GGATGCTAGC GATCGATCCG
GCCAATGAGG GCGGCAAGAT CCTGCGCGCC CGCGTCCTCA CCCTGGACGG CGACCGCGAC
GGGGCGATCG CCGAACTCGA AAAGGCGATC GCGGCCGACG GCGAATCGGC CGCCAAGCTG
ATGACCCTGC TCGATCTCTA CGGCACCCAG GACGACTTCC CCCACGTGGC GCGGACCTTC
GCCCGGCTGT TCGCGCTGCA GCCGGACAAT GCCGACCTGC GCTTCGAATA TGCCCGGATG
CTCTACGAGC ATGGCCGGCC CGGCCGCGCG CTCGAACTGC TCGCGCGGCT GCTGCGGCGC
CATCGCGGCG ACGCCGCGAT CCAGCAGCGG ATCGTCGACC TGTGGAACGA GGTCGGCAGC
GACCGGATCG ACATCGAAGG GGTCCGGCGC TTCGTCGACC GGACCGGCGA CAGGGCGATG
AAGATCGCGC TCGGCCACCT GCTGCTCGAC CAGCGGCGCT TTGCCGAGGC GGAGGCGGTG
CTGCGCCCCT TCGTCGACGG CAAGGACGTC ACCGCCGCCG GGGTCGAGGC CGACGTCCTC
TATGCCGGCG CGCTGTCGGG GTTGGGCCGG GGGCCGGCGG CGCTGGCGCT GGTCGACCGC
GTGCTGCGCT TCGACAAGAG CAATCCCCGC GCGCTGCTGA TGCGGGTGCG GGTGGCGACG
GCGGCGGGCG ACCTCGCCGG CGCGCTGCGC GACGCCCAGC TCCTGACCAG CGACAATCCA
CGCATGGCGG AAGGCCGCGT CGCGCTGGCC GACATCTATG TCCGCCGCGG CGAGACGGTG
CTCGCCGACG GCGCCTATGC CAATGCGATG AAGGAGCTGT CCGACGACGG CGACATGCTC
CAGGCCTATG TCGATCATCT GCTGCGGACC CGGCGCGGGC CGATGGCGCT CGACATCGCC
CGCCGCTTCA CCCGCGAGAA TCCCCGGTCG CGTGACGGCT GGCGGATTCG CGGGGAGCTG
TGCCTGTCGC GCGGCGACGC CGCCTGCGTC GCGGAGGTGA TGGAGGGGCT CGAGCAGGTG
CCGGGCGGGC TGAAGCTGCG CCGGACGCTC GAAAACCGGC GCGCCGCGCG TGCCGCTGGG
CAAGCCCCCT CGACTTGTGG CAGGACGGGC GCGGCATGCT GA
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| Protein sequence | MRPRWVLAAR HRAERDGWQE MASGLARFIA AAALLMLVAC GSAEEKASKA AARYDVYYAR
RDFTSARIEI KRALAAQDDI PEYWARLARV ELASGRLLEA YEAYARLVEL DPNDAEAIQA
MAELSYSGGS YDDAERLADQ MLEKQPRSLR MLLVKGSVAA ARHDLPAARA TADRMLAIDP
ANEGGKILRA RVLTLDGDRD GAIAELEKAI AADGESAAKL MTLLDLYGTQ DDFPHVARTF
ARLFALQPDN ADLRFEYARM LYEHGRPGRA LELLARLLRR HRGDAAIQQR IVDLWNEVGS
DRIDIEGVRR FVDRTGDRAM KIALGHLLLD QRRFAEAEAV LRPFVDGKDV TAAGVEADVL
YAGALSGLGR GPAALALVDR VLRFDKSNPR ALLMRVRVAT AAGDLAGALR DAQLLTSDNP
RMAEGRVALA DIYVRRGETV LADGAYANAM KELSDDGDML QAYVDHLLRT RRGPMALDIA
RRFTRENPRS RDGWRIRGEL CLSRGDAACV AEVMEGLEQV PGGLKLRRTL ENRRAARAAG
QAPSTCGRTG AAC
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