| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_2299 |
|---|
| Symbol | |
|---|
| ID | 5198363 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | - |
|---|
| Start bp | 2555806 |
|---|
| End bp | 2556819 |
|---|
| Gene Length | 1014 bp |
|---|
| Protein Length | 337 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 640581845 |
|---|
| Product | beta-lactamase domain-containing protein |
|---|
| Protein accession | YP_001262796 |
|---|
| Protein GI | 148555214 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1234] Metal-dependent hydrolases of the beta-lactamase superfamily III |
|---|
| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.000114028 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.00742291 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACATCGC AGCGCGTCAG CCGTCGTTCG ATGCTGGGGG GCATCGGGCT GGCGGCGGCC
GTCGCCGCCG GCGGCGCACC GGCCGTCCGG GCGGCGACGG CGTCGTCGTC GTCCGCGACG
AAGCTCTACC TGCTCGGCAC CGGCGGCGGG CCGATGCTGG GGGGCGAGCG CGGCATGGCG
GCGAGCGCGC TGGTGGTCGG CGACGCGGTC TACCTGATCG ATTGCGGCTA TGGCGCGTGC
GAGCGCATCT CGCGCGCCGG CCTGTCGGTC GCGGCGATCG GATCGGTGTT CATCACCCAC
AACCATGCCG ACCATCTGCT CGACTATGGC TCCTTCCTGT TCTTCTCCTG GTTGCAGGGG
CGGCGCGACG AGCTGCGCGT CTACGGGCCG CCGCCGCTCC GCAAGATCAC CGACGACCTG
CTGTCGGCCA ATGCGCTGCC GCTGCACTAT TACAAGGAGG ACATGCACTC GCCGCCGATG
CCGCCGGTGC GGGTCGACGA GATATCCGCG GCGGGGCCGG TCATGCAGGA CGACCGCGTC
CGCGTCCGGT CGGTCGTCGT CCACCATCCG CCGGTCGAGC CGGCGCTCGC CTATCGCTTC
GACACGGCCG ACCGCTCGGT CGTCTTCTCG GGCGACACCT CGCCGTCCGA CGCGCTGATC
GGCCTCGCCA GGGGCGCCGA CATATTGGTC CACGAGGCCT GCGACGTGGC GCGGACGATC
GAGATGATGA AGGGCGCGCC GCCGCCGGCC GACGGCGACG CCCGGATCAA CGGCGCCGGC
AGCTCGGCGC CGCAGGGCTA TGATCCCGCC AAGTTCGCCG AGCATGTCCT CAAGGCGCAC
ACTTCGGTGG CCGACGCCGC GAAGGTCGCC GCGGCGGCCG GGGTCAAGAC GCTGGTCCTC
CACCATCTCT CGCCGGGCAG CTCGAAGATC GTCCCCGACG CGGCCTGGAT CGCCCAGGCG
CGGCCGCATT TCGCGGGCGA GATCGTCGTC GCCCATGACG GCGCCATCCT CTGA
|
|---|
| Protein sequence | MTSQRVSRRS MLGGIGLAAA VAAGGAPAVR AATASSSSAT KLYLLGTGGG PMLGGERGMA
ASALVVGDAV YLIDCGYGAC ERISRAGLSV AAIGSVFITH NHADHLLDYG SFLFFSWLQG
RRDELRVYGP PPLRKITDDL LSANALPLHY YKEDMHSPPM PPVRVDEISA AGPVMQDDRV
RVRSVVVHHP PVEPALAYRF DTADRSVVFS GDTSPSDALI GLARGADILV HEACDVARTI
EMMKGAPPPA DGDARINGAG SSAPQGYDPA KFAEHVLKAH TSVADAAKVA AAAGVKTLVL
HHLSPGSSKI VPDAAWIAQA RPHFAGEIVV AHDGAIL
|
|---|
| |