Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_2264 |
Symbol | |
ID | 5198631 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | - |
Start bp | 2518706 |
End bp | 2521183 |
Gene Length | 2478 bp |
Protein Length | 825 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 640581810 |
Product | TonB-dependent receptor |
Protein accession | YP_001262761 |
Protein GI | 148555179 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.249992 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTCAAGC GACATTGGTA TGTGGGTAGT GCGTGCGCGG CGCTCGCGGC GGCGCTGACG GCGGTTCCGG CGCTGGCGCA GTCGGCGCCC GCCGAGACGG CGGAGACGGC GTCGGACGGC GGGCTTCAGG AGATCGTCGT GACTGCGACG CGGCGCGACT CCAACCTCCA GTCGACCGCG ATCGCGATCT CGGCCGTCGA CGAGAATCTG ATCCGGCAGG CGAGCCCGCG CAACGTCGGC GACCTCGCCG CCTTCGTGCC GAACTTCTCG GCGGCGACGA TCACCAATTT CAACGCGGCG TCCTTCTCGA TCCGCGGCGT CGGCCAGAAC AGCATCATCG TCTATTTCGA GCCGCCGGTC GCGGTGCTGG TCGACGATTT CGTCATGCCG TCGGTGCAGA CCCAGCTGCT CGACACCTTC GACGTCTCGC AGGTCGAGGT GCTGCGCGGG CCGCAGGGCA CGCTGTTCGG CAAGAACACC ACCGGCGGCG CGGTCGTCGT CAAGACCAAG CGGCCCCAGC TCGAGAAGAT CGAGGTCGAG GGCCGGCTCC AGGTCGGCGA CTTCGGCACG GTGATCCCGC AGGCCTCGTT CAACCTGCCG ATCGGCCAGA CGCTCGCCTT CCGTGGCGTG ATCGGCCACA CCCAGTCGGA CGGCTATTAC AAGAATGGCG GCTGCTTCGG CCCCGTCACC CCCTTCGCCG CCACTGCCTT CGCCGCCAAG TTCGCGGGGC AGAGCGGCTG CGGCGACGGC CGCTCGCTCG GCGGGCAGGA CGTGTGGAAC GCCCGCGCCA AGCTGCTGTG GGAGCCGAGC GACGCGTTCA GCGCGCTGCT CCAGTACGAA TATCTGCGCG ACCGGTCGGA CAGCGTCCCC TCGGTCAACC TGACCCCGGC GTCGAACGGC TTCCTGTTCC ACTCGCTCGG GCTCGGCTCG GTGCCGAACC GCAACAGCGA TCCGCTCAAG AACGCCGCGC TGACCGACCG GCAGGCCGCG CTGATCAAGG AGAAGAGCGG CCAGATCGTC AATGTCGACG GCGTCTACCT GAACATGGAC TACAAGACCG ACTGGGGCAC CTTCACCTCG GTCAGCGGCT ATCGCAACCA GCGGTCGCGC CTGCCCAACA CCTATATGGG CACCGCGCCG GTCGCGTCCG ACGGCACCGT CCTGTCGCTG TTCGACGCGC AGCGCGACGA CAACCGCAAG ACCTATCAGC AGGAACTGCG CTTCGCCTCC TCGTTCGACG GGCCGTTCAA CTTCGTCGCG GGCGGCTTCT ACCAGAAGGA CAAGACCAGC TTCTGCGTGG CGCAGCTGCT CGGCTTCCTC GACCTCGCCA GCGGCGGGCC GGGCTTCGGC AACTGGAACG ACAATCCCTA TCTGCTGTGC AACGCGCAGC GCTCCCGCTC GAAGGCGACC TTCGTCGAGG GCACCTTCAA GTTCACGCCG ACGCTGACCC TGACCGGCGG CTTCCGCTAC ACCTGGGAGA ACAAGAGTTG GTACGGCCGC CAGCAGGTGT TCGCGCAGCA GCTCGAGGGC GGGTTCGATC CGTCGATCGT GCTGGAGAAT GCGCTCGACG CGAACGTGTT CGACTATACC GCCGGCGTCA TCAAGGTGAA GGACAGCGCC CGCGAACCGA CCTGGCGCGT CAGCCTCGGC TGGCAGGCGA CGCCGACCGT CTTCGCCTAT GCGACCTATT CGCGCGGCTT CAAGGCGGGC GGCTTCAACG ACCAGATCGG CAGCTTCCAT CCCTTCGTCA ACGCCGACGG CAGCGACAAT CCGGCGGCCT TCGCGGCGGC GGCCTCGGCC ACCAAGCCGG AGCGCGCCGA CAGCTACGAA GCGGGCGTGA AGACCGAACT GTTCGACCGG CACCTGCGCT TCAACCTGAC CGGCTTCTAC GTCGACTATA ACGACCTGCA GAAGCAGATC GTCGTGCCGC TGGTGGTCGG CGGGCAGCAG TTCCAGGTCA CCCGCTTCTT CAACGCCGCC AAGGCGACGG TGAAGGGCAT CGAGCTGGAA AGCACGCTGA TCCCGGTGCA CGGCCTCACC CTGCGCGGCC TGGTCGGCTA TCAGGACGGC AAGTATAAGA GCTACGTCAC GCCGATCCCG GCGGGCTACG ACCTGTCGAC CGCGCCGCTC GACCGCCTGC CCAAGTGGCA GTGGACGGCG GATGCGACCT ACGAGCTGCC GATCGGCGAC TTCAAGCTGC AGTTCAACGG CAACATCAAC TATGTCGCCC GCAACCTGTT CACCCAGTCG ATCACCAGCC CGGCGGAGAA CACCTTCCTC AACGCCCGGA CGCTGTACAA CGCGTCGATC ACGCTGATGC AGGCCGACGA CAAATATTAT GTCCGCCTGA TCGGCCGCAA CCTCAGCGAC AAGCGCTACC TGACCGGCGC GCAGGTGGTC GGCGGCCTCT GGGCCAACGG CCAGTACGGC CCGCCGCGCT ACTTCGGCGC GGAACTGGGG TTCAAGCTCG GCAACTGA
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Protein sequence | MLKRHWYVGS ACAALAAALT AVPALAQSAP AETAETASDG GLQEIVVTAT RRDSNLQSTA IAISAVDENL IRQASPRNVG DLAAFVPNFS AATITNFNAA SFSIRGVGQN SIIVYFEPPV AVLVDDFVMP SVQTQLLDTF DVSQVEVLRG PQGTLFGKNT TGGAVVVKTK RPQLEKIEVE GRLQVGDFGT VIPQASFNLP IGQTLAFRGV IGHTQSDGYY KNGGCFGPVT PFAATAFAAK FAGQSGCGDG RSLGGQDVWN ARAKLLWEPS DAFSALLQYE YLRDRSDSVP SVNLTPASNG FLFHSLGLGS VPNRNSDPLK NAALTDRQAA LIKEKSGQIV NVDGVYLNMD YKTDWGTFTS VSGYRNQRSR LPNTYMGTAP VASDGTVLSL FDAQRDDNRK TYQQELRFAS SFDGPFNFVA GGFYQKDKTS FCVAQLLGFL DLASGGPGFG NWNDNPYLLC NAQRSRSKAT FVEGTFKFTP TLTLTGGFRY TWENKSWYGR QQVFAQQLEG GFDPSIVLEN ALDANVFDYT AGVIKVKDSA REPTWRVSLG WQATPTVFAY ATYSRGFKAG GFNDQIGSFH PFVNADGSDN PAAFAAAASA TKPERADSYE AGVKTELFDR HLRFNLTGFY VDYNDLQKQI VVPLVVGGQQ FQVTRFFNAA KATVKGIELE STLIPVHGLT LRGLVGYQDG KYKSYVTPIP AGYDLSTAPL DRLPKWQWTA DATYELPIGD FKLQFNGNIN YVARNLFTQS ITSPAENTFL NARTLYNASI TLMQADDKYY VRLIGRNLSD KRYLTGAQVV GGLWANGQYG PPRYFGAELG FKLGN
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