| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_2160 |
|---|
| Symbol | |
|---|
| ID | 5198579 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | - |
|---|
| Start bp | 2419978 |
|---|
| End bp | 2420874 |
|---|
| Gene Length | 897 bp |
|---|
| Protein Length | 298 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 640581705 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_001262657 |
|---|
| Protein GI | 148555075 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 0.200537 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTGGACC GCTATCTGCT CCGTTACTTC CTGGCGGTGA TCGACCAGGG CAATTTCTCC
AAGGCGGCGG CGTCGTGCAA CGTCTCGCAG CCGACCCTGT CCGCCGGCAT CGCCAAGCTC
GAAACCCTGC TCGGCCGTCC CTTGTTCATC CGCACCAACC GCCGGGTCGA GCTGACCGCG
GCGGCGGTCG ACCTCGCCGG CCATGCGCGC CGGATCGAGG CCGAGTTCGC GGCGGCCGAG
CGCGCGGTGC AGTCGGCGGC GGCGCCCGCG ACGGTGCGGC TGGGCGTGCT CGGCTCGATC
CCGGCGGCGT GGATCGAGGA TTATGCCGCG CGGCTGCGCG ACAGCGGCGG CGGCGAGCGG
GTCGAGCTGG TCGAGGGGCG CGAGCGCGAG CTGGCCGAGC GGCTGGCGCG CGGCAATCTC
GACGTGGCGC TGACCATCCT GCGCGGCGAC AGCCGGCTGC CGGCCGAGCG GCTGCTGACC
GAGGGCTATG CGCTGGCGAT GGCGGCGACC CACCGGCTCG CCGACCGCGA CATGATCGAC
GGGGCCGAGC TGGCCGGCGA GCCGATGATC GTTCGCCGCC ATTGCGAACT GCTGTCGGAC
ACCAGCCGCT ATTTCACCGC GCGCGGCGTC CGCCCCTTCT TCCCGGCGCG CGTCACCAGC
GACGATCGCG CGCTCCGCCT CGTCCGTGCC GGGCTGGGCG TGACGGTGAT GCCGGAGAGC
TTCCACGCCC CCGGCGTGGT GCGCCCGCGC CTGGCCGATT TCGGCTTCAC CCGTGACATC
GGATTGCTGT TCGGCGAGCA TGCCGGCCGG GCCGTGCGCG ACCGGCCGGC GATCCGAATC
CTCGTCGACC TGATCGAAAG CCGACCGGTC GACGGATTCG CGCGACGCGG CGTGTAG
|
|---|
| Protein sequence | MVDRYLLRYF LAVIDQGNFS KAAASCNVSQ PTLSAGIAKL ETLLGRPLFI RTNRRVELTA
AAVDLAGHAR RIEAEFAAAE RAVQSAAAPA TVRLGVLGSI PAAWIEDYAA RLRDSGGGER
VELVEGRERE LAERLARGNL DVALTILRGD SRLPAERLLT EGYALAMAAT HRLADRDMID
GAELAGEPMI VRRHCELLSD TSRYFTARGV RPFFPARVTS DDRALRLVRA GLGVTVMPES
FHAPGVVRPR LADFGFTRDI GLLFGEHAGR AVRDRPAIRI LVDLIESRPV DGFARRGV
|
|---|
| |