| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_2070 |
|---|
| Symbol | |
|---|
| ID | 5196735 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | + |
|---|
| Start bp | 2325564 |
|---|
| End bp | 2327024 |
|---|
| Gene Length | 1461 bp |
|---|
| Protein Length | 486 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 640581615 |
|---|
| Product | AMP-dependent synthetase and ligase |
|---|
| Protein accession | YP_001262567 |
|---|
| Protein GI | 148554985 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACGTCG CCGACCGCAT CCGGCGCTCC TTCCGCGCGC TTGGCGATCG CCCGGCGATC
GAGTTTCGCG GGCGCTGGGT GAACTGGCAG GAGGTCGGCC GCTTCGCCGA CCGGCTCGAC
ACGCTGCTGG CGGAAGCCGG CGTCGCGCCC GATGCGCGGA TCGGGCTGGT CGCGCGCAAC
CGCGCCTCGC ATGCGGCGGC GATGCTGGCA CTGCTGGCCG CGCGGCGCTC GATCAGCCTG
GTCCACCCCT TCCTGCCCGC CGCCGCGCTG GCGGCCGAGG TCGAGCGGCT CGGCGCCGCC
GCGCTGATCG CCGATGCCGA AGACTGGCCG CCGATCGCGG AGAGCTGCGC CCGCATCGGC
TGCGCGGGTA TCGCGCTTGG CGAGGAGCCG TTCCTGCCGA GGCCGGTCGA CGGGCTGGAG
CACGCGACGA TCGTCCAGGC CGCCCATGAC GGCGTGATCG AGATATTGTC GAGCGGCACC
ACCGGCCCGC CCAAGCGGCT GCCGCTGCCG CTCCACGTCC TCCAGCGCGC AGTCGACAGC
GCGCCCGAGG GCGAGAGCGC CGATGGTCCG CCGCCCCAGA TCAATGTCTG GCCGTTGAGC
GGGGTCGGCG GGCTGAGCCT GCTCGCGGCG AGCGGCGCGC AGGGCGCCCC GCTCGTCCTG
ATCGAGAAAT TCACGGCCGA GGCGCTGGCC GACGCGGTGC GCCGCCACCG GCCGCCGATG
CTGGGCCTGC CCCCGGCGGC GATCCGCATG ATGCTCGACG CCGACATCCC GCGCGCGCAT
CTGGCGAGCG TCACCGCGAT CTACGGCGGA TCGGCGCCGC TCGATCCCGA CATCCAGGAG
CGGTTCGAGC GCCAGTACGG CATCCCGATC CACTGGGGGC TGGGCGCGAC CGAATTCTGC
GGCACGATCG TCCGCTGGAC CCCGGCCATG CGCCGCGCGG TCGGCGATGC GAAGCGCGGC
AGCGTCGGCC TGCCGATGCC CGGCGTGGAG CTGCGCGTGA TCGACCCCGA CGACGGATCG
TCGATCGAGG ACGGGCGCGA GGGATTGATG CAGGTCCGCT GCCCGGCGAT CCGTCCCGAC
TGGGTGGCGA CCACCGACCT GATCCGCATC GACGCCGACG GCTATGTCTA TCATCTCGGC
CGGCACGACG GCGCGATCAT GCGCGGCGGC TTCAAGATCA TGCCCGAGCG CGTCGCCGAC
GCGCTGCGCG AGCATCGCGC GGTCCGGGAC GCGGCGGTGG TCGGGCTGCC CGACGAACGG
CTGGGGGCGG TCCCCGCCGC GATGATCGAG CTGCACGACG GCGCGCAAGC CGACGAGGCG
GCGCTGCTCG CGCATCTGCG CGAGCGGCTG CCCTCGACCC ATATGCCGGT GCGGATCGCC
GTCGCCGACG AGCTGCCGCG CACCCCCTCG CTGAAGGTCA GCCTCGCCGC CGTCCGCGCG
GCGATGACCG AGACCGCCTA A
|
|---|
| Protein sequence | MDVADRIRRS FRALGDRPAI EFRGRWVNWQ EVGRFADRLD TLLAEAGVAP DARIGLVARN
RASHAAAMLA LLAARRSISL VHPFLPAAAL AAEVERLGAA ALIADAEDWP PIAESCARIG
CAGIALGEEP FLPRPVDGLE HATIVQAAHD GVIEILSSGT TGPPKRLPLP LHVLQRAVDS
APEGESADGP PPQINVWPLS GVGGLSLLAA SGAQGAPLVL IEKFTAEALA DAVRRHRPPM
LGLPPAAIRM MLDADIPRAH LASVTAIYGG SAPLDPDIQE RFERQYGIPI HWGLGATEFC
GTIVRWTPAM RRAVGDAKRG SVGLPMPGVE LRVIDPDDGS SIEDGREGLM QVRCPAIRPD
WVATTDLIRI DADGYVYHLG RHDGAIMRGG FKIMPERVAD ALREHRAVRD AAVVGLPDER
LGAVPAAMIE LHDGAQADEA ALLAHLRERL PSTHMPVRIA VADELPRTPS LKVSLAAVRA
AMTETA
|
|---|
| |