Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_2038 |
Symbol | |
ID | 5197428 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | + |
Start bp | 2286901 |
End bp | 2287575 |
Gene Length | 675 bp |
Protein Length | 224 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640581582 |
Product | isochorismatase hydrolase |
Protein accession | YP_001262535 |
Protein GI | 148554953 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG1335] Amidases related to nicotinamidase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 31 |
Plasmid unclonability p-value | 0.608826 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCATGACG TTCAAATTCG CCAGGAGATT GTCGATCGGG TGATGGCGCG CAGGGGCAAG CTGCACTGGT TCGAGCAATT CGACCCAGCC CGCACCGCGC TGATCGTGAT CGACATGCAG AACACCTTCT GCGAACCCGG CAGCCCGGCG GAAGTGGCGG TCTCGCGCTC CATCGTTCCC AATATCAATC GACTGGCCGG CGAGCTGCGC GGGCGCGGCG GGCGGGTCGT CTGGGTATTG CACGCCAATT CGCATTGGGG TGATCGCACC GACTGGGAGC TGTTCTTCAA CAATGTCGTT TCGGACGACG TGAAGCTGCG CACGGCCGCC AGCCTCGCGC CCGGCAAGCA GCAGGTCTGG TCGGGGCTGG CGACGGCGCC GGACGACATC ACGATCATCA AGAACCGCTA CAGCGCGCTG ATCCAGGGTT CCTCGTCGTT GGAGCGCGTG CTGCGCAACC TTGGCATCGA CACCGTGCTG ATCGCCGGCA CGAAGACCAA TGTCTGCTGC GAAGCGACCG GGCGCGACGC GATGATGCTC GATTTCCGGA CCGTCATCGT CTCCGATTGC TGTGCGGCGC TGTCCGATGA CGAACATCGC GCCACGCTCG AAACCTTCAT CCAGCAATTT GGCGATGTTC TCTCATCGGA TGAGGTGGTG CGGCGGATGC GTTAA
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Protein sequence | MHDVQIRQEI VDRVMARRGK LHWFEQFDPA RTALIVIDMQ NTFCEPGSPA EVAVSRSIVP NINRLAGELR GRGGRVVWVL HANSHWGDRT DWELFFNNVV SDDVKLRTAA SLAPGKQQVW SGLATAPDDI TIIKNRYSAL IQGSSSLERV LRNLGIDTVL IAGTKTNVCC EATGRDAMML DFRTVIVSDC CAALSDDEHR ATLETFIQQF GDVLSSDEVV RRMR
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