| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_2023 |
|---|
| Symbol | |
|---|
| ID | 5200935 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | + |
|---|
| Start bp | 2267193 |
|---|
| End bp | 2268932 |
|---|
| Gene Length | 1740 bp |
|---|
| Protein Length | 579 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 640581567 |
|---|
| Product | amidohydrolase 3 |
|---|
| Protein accession | YP_001262520 |
|---|
| Protein GI | 148554938 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG3653] N-acyl-D-aspartate/D-glutamate deacylase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.730117 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTCGACC TGGTCATCCG GAACGGCACC GTCGTCGACG GCAGCGGCGC GCCCGCCATG
ACCGCCGACA TCGGCATCGC CGGCGACCGG ATCGCCGCCG TGAGCGCGAC GCCGCTGCCC
GCCGGTCGGG AGGAGCTGGA CGCGAGCGGC CTGCTGGTCA CGCCCGGCTT CGTCGACATC
CATACCCATT ATGACGGGCA GGCGACGTGG AGCGGCACGC TCTCCCCCTC CTCCGCCCAT
GGCGTGACCA CGGTGGTGAT GGGCAATTGC GGCATCGGCT TCGCGCCGTG CCGGCCGGAG
GACCGGGACC GGCTGATCAA GCTGATGGAA GGCGTCGAGG ACATTCCGGA GGTCGTGATG
GCCGAGGGGC TGCCCTGGAA CTGGGAGAGC TTCCCCGAAT TCCTCGACGC GGTGGCGGCG
ATCCCGCACG ACGTCGATAT CGCCGCCTAT GTGCCGCATT CGGCGCTGCG GGTCTATGCG
ATGGGCCAGC GCGGCGCCGA TCGCGAACCG GCCAGGAAGG ACGACCTCGA CCGGATGGTG
GCGCTGGTCC GCGAAGCCCT TCGCGCGGGC GCGCTGGGCG TCGCGACGTC GCGGACGCTC
GTCCATCGCA CGCCGGGCGG CGAGCTGATC CCGTCCCACG ATGCGGCGGA GGACGAGCTC
CAGGCGCTGG CCGGGGCGCT GGCGAGCGAG GGGCACGGCG TCTTCCAGAC GGTGATGGAC
CTCGACGACG CGACCGCCGA CGAGGATTTC GACCTGCTCC GCCGGATCGC CGAGCGCTCG
GGCCGGCCGA TCAGCTTCTC GCTGCTCCAG CCGCTCAACC ATCCCGGCGT CTGGAAACGG
ATGCTCGACA AGCTCGACGG CGCGGCCAAG GACGGCGTGC CGATCAGCGC GCAGGTGTTC
GGCCGGCCGG TCGGCATGCT GCTGGGGCTG GACCTTTCCT TCCACCCCTT CTCCTTCCAT
CCCTCCTATC GGGAGATCGC GTCACTGCCG CTCGCCGAGC GGGTCAAGGC CCTGCGCCGG
CCGGAGCGCC GGGCGCGCAT CCTGGCGGAA CGGCCGATCG ACAACGGCCT GCCCTTCCTC
GCCCATCTCG CGCGCTACGA GTGGATGTTC GAGCTCGGCG AGCGCCCGGA CTATCAGCCT
TCGCTCGACC GGAGCATCGC CGAGATCGCC GCGCGCACGG GCGTCGACGC AAGGGAGATC
GCCTATGACA TGCTGCTGGA GCGCGACGGG CGGAACATCA TCCTGCTGCC CCGCGCCAAT
TATGGCGACG GCAATCTGGA CGCCGCCCTG ACGATGATGC GCCATCCGCG AACGACGCTC
GGGCTCGGCG ACGGCGGCGC GCATTGTGGC GTGATCTGCG ACGCGAGCCT GCCGACCTTC
ATGCTGACCT ATTGGGCGCG CGACCGCGCC GCCGACGGCC TGACGATCGA GGAAGCGGTG
CGGGCGCTCA CCGCCGAAAC CGCCCAGGCC GTGGGGCTGC GCGATCGCGG CCGGATCGCA
CCGGGCTTCA AGGCGGACGT CAACCTGATC GACCATGGCC GGCTCACCCT CCACGCCCCC
GAAATGGTGG CGGACCTGCC GGCCGGCGGG CGGCGGCTGC ACCAGCCGGC GACCGGCTAT
GTCGCCACCA TCGTCAACGG CCGGGTGACG CGGCGCGACG ATGCCGCGAC GGGCACGCTG
CCGGGCCGCC TCGTCCGTGG CGCGCAACCC GCCCCGGTCG AGGATCAGGG GAGCGCATAG
|
|---|
| Protein sequence | MFDLVIRNGT VVDGSGAPAM TADIGIAGDR IAAVSATPLP AGREELDASG LLVTPGFVDI
HTHYDGQATW SGTLSPSSAH GVTTVVMGNC GIGFAPCRPE DRDRLIKLME GVEDIPEVVM
AEGLPWNWES FPEFLDAVAA IPHDVDIAAY VPHSALRVYA MGQRGADREP ARKDDLDRMV
ALVREALRAG ALGVATSRTL VHRTPGGELI PSHDAAEDEL QALAGALASE GHGVFQTVMD
LDDATADEDF DLLRRIAERS GRPISFSLLQ PLNHPGVWKR MLDKLDGAAK DGVPISAQVF
GRPVGMLLGL DLSFHPFSFH PSYREIASLP LAERVKALRR PERRARILAE RPIDNGLPFL
AHLARYEWMF ELGERPDYQP SLDRSIAEIA ARTGVDAREI AYDMLLERDG RNIILLPRAN
YGDGNLDAAL TMMRHPRTTL GLGDGGAHCG VICDASLPTF MLTYWARDRA ADGLTIEEAV
RALTAETAQA VGLRDRGRIA PGFKADVNLI DHGRLTLHAP EMVADLPAGG RRLHQPATGY
VATIVNGRVT RRDDAATGTL PGRLVRGAQP APVEDQGSA
|
|---|
| |