| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_1885 |
|---|
| Symbol | |
|---|
| ID | 5196443 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | - |
|---|
| Start bp | 2111229 |
|---|
| End bp | 2112581 |
|---|
| Gene Length | 1353 bp |
|---|
| Protein Length | 450 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 640581430 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_001262383 |
|---|
| Protein GI | 148554801 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACGAGC GTAGCGGGCC CTGGTGGCGG GGCGTCACCG GCTATCAATG GCTGGTCTTC
GCGGTCGCGT CGGGGGCCTG GCTGTTCGAC ACGATGGACC AGCGCCTCTT CTCGCTCGCC
CGCATCCCGG CGCTCGGCGA CCTGATGGCG CTGCCCCCTT CGCATGTCGA GGTGCAGGCC
TTCGCCAAGA TCGTCACCGC CTTGTTCCTG GTCGGCTGGG GACTGGGCGG GCTGATCATC
GGTCCGCTCG GCGATCGCTA CGGCCGGGTC CGCCTGCTCG CCATCTCGAT CCTGCTCTAT
TCGATCTGCA CCGGCATCAC CGCGCTGTGC CGGACCCCGG CCGAGTTCGC GGCGCTGCGC
TTCGTCACCG GCCTGGGCAT CGGCGGCGTG TTCGGCCTCG CGGTCGCGAT CATCGTCGAG
ACGGTCGACG GGCGGGCGCG GCTGGCGATG TTGGCGGGGC TCCAGCTTCT CTCGACCGTC
GGCAATGTCG GATCGGCGCT GGTCAAGATG GGGGTCGACG ATCTCGCGCG GCACGACCTG
ATCGCCGCCG GATCGGTGTG GCGCTGGCTG TTCGCGCTCG GCGCGCTGCC GGCGCTGATC
GCGATCGTCG CGATGATCGG CTTGCGCGAG CCCCAGTCCT GGCGCGAGCG CAAGGCCGAG
GGGCGGCTGC CCAAGGGCGC GTTCGGCGCC TATGTCGACC TGCTCGGCAA CCCGGCCGAG
CGGCGCGGCC TGCTGATCGG CAGCCTGCTC GCGGTCGCGG GCGTGGTCGG GCTGTGGGGG
ATCGGCGAAT ATGCCGTCGA TCTGCAGCAT GCGGTGTTCA CCGCCTATTA TGACGGGCGG
CTCGCGCCCG ACGCGGCCAA GGCGGCGGTC ACCGACGCCA AGAACTGGGC CTATATGCTG
CAGATGGCGG GCGGGGCGGT CGGCATGCTG ATCTTCACCC TGATCGCCGA TCGGGCGGGG
CGGCGCCCGG CCTTCCTGAC CTGCTTCGCC GCCGCCTTCG TGGTGACGAT GTTCGTCTAT
GCGCGGATGC AGACGCCGGC CGACGCCTAT TGGATGATGC CGCTGATGGG CGCCGCGCAG
TTCAGCCTGT TCGCCGGCTT CTCCATCTAC CTGCCCGAGC TGTTTGGCGC GGCGGCGCGC
GGGACCGGCG TGTCCTTCGC CTATAATCTC GGCCGCTTCG CCGCCGCCGC CGGCAGCTTC
GGCTCGGCCT GGCTCAGCAC CAGCCTGTTC GGCGGCTTCG ACGCCCCCGA TCCGCTGCGC
TATTCGGCGA TGACGATGTG CGTGATTTTC CTGATCGGCC TCGCGGCGGC GTGGTTCGCG
CCGGAAACCC GCGGACGGCC GCTGCCCGCA TGA
|
|---|
| Protein sequence | MDERSGPWWR GVTGYQWLVF AVASGAWLFD TMDQRLFSLA RIPALGDLMA LPPSHVEVQA
FAKIVTALFL VGWGLGGLII GPLGDRYGRV RLLAISILLY SICTGITALC RTPAEFAALR
FVTGLGIGGV FGLAVAIIVE TVDGRARLAM LAGLQLLSTV GNVGSALVKM GVDDLARHDL
IAAGSVWRWL FALGALPALI AIVAMIGLRE PQSWRERKAE GRLPKGAFGA YVDLLGNPAE
RRGLLIGSLL AVAGVVGLWG IGEYAVDLQH AVFTAYYDGR LAPDAAKAAV TDAKNWAYML
QMAGGAVGML IFTLIADRAG RRPAFLTCFA AAFVVTMFVY ARMQTPADAY WMMPLMGAAQ
FSLFAGFSIY LPELFGAAAR GTGVSFAYNL GRFAAAAGSF GSAWLSTSLF GGFDAPDPLR
YSAMTMCVIF LIGLAAAWFA PETRGRPLPA
|
|---|
| |