Gene Swit_1550 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwit_1550 
Symbol 
ID5197602 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingomonas wittichii RW1 
KingdomBacteria 
Replicon accessionNC_009511 
Strand
Start bp1724953 
End bp1726014 
Gene Length1062 bp 
Protein Length353 aa 
Translation table11 
GC content66% 
IMG OID640581098 
ProductRieske (2Fe-2S) domain-containing protein 
Protein accessionYP_001262051 
Protein GI148554469 
COG category[P] Inorganic ion transport and metabolism
[R] General function prediction only 
COG ID[COG4638] Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value0.276626 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0604744 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCATGG TCGCCAAGCC AGCCGGGTAC GAACCGATCG CACGCAACTA TCCCTATAAT 
TGCTGGTGGG TCGCCGCCTT TGCCGACGAG GTCGGCCGCG TGCCGCTGGG GCGCTGGCTG
CTCGACACGC CCGTCGTGCT CTATCGCACC CAGGGCGGCG AGGTCGTGGC GCTGGAAGAT
CGCTGCCCGC ACAGGCAGGC GCCGTTGTCG ATCGGCAAGC TGCAGGGCGA CGCGATCGAA
TGCGGCTATC ACGGCTTCCA GTTCGGGCGG GACGGGCGGT GCGTGCGGGT CCCGACGATG
GCCAGCCCTC CGCCCATATC GATCGAGACC TTTCCCGTAC GCGAGATCGG GCCGCTCGTT
TGGGTCTATC TCGGCGACAG CGCTTGCCTC GACGCGGTTC CGCCGCCCCC GACCATGGCC
TGGATGAGCG ATCCGTCCTT CGCCATACGA CAGGGCAAGA CCGAGATCGC GGCCAACTAC
CTGCTGCTCA AGGAGAATGT GCTCGACCTG ACCCATTTCG GCTATGTCCA TGCGGGCAGC
TTCGGAATCA CGAACGTCGT CGGCAAGCTG ACCGTGACGC GGACCGACGA CACGGTCGGC
TATGAGGAGA TATTCGACCC GGCCCCCCTT CCCGACGGCT TGTCGCACGC ATTCGGCATC
GCCCCCGGCA CGCCCTGGTC ACGCTCCACC AAAGGCGCCT TCCTGTCCCC CGCCGCGCAA
TATGGAAGCG CGTCCTTCGC GGACCCCAGG ACGCCCGAAA CGCCCAACGC CTCGCACCAG
TTCGCGCACT TCACCACGCC GATCGACCAT GAGCACATGC ACTATTTCTA CGTGTTCGGC
CGCGACTATG CGCGCGAGCC CGCTGCGATG GACCACTTCG CCGCGATGGT CGAAAAGGGG
TTCAAGGAAG ACGAGTTCGT CCTGGAGCAG GTGCAGGCGC TGATCAGCCG CCGGCCGCGA
CGAGGATCGA CCGGCGAGCG AAGCGTCAAG GCCGATGCCG CCGGTGTCGA GGCGCGCCGG
ATCATCGAAC GATGGATGCA ACGGGAAACC ATCCCCGCCT GA
 
Protein sequence
MAMVAKPAGY EPIARNYPYN CWWVAAFADE VGRVPLGRWL LDTPVVLYRT QGGEVVALED 
RCPHRQAPLS IGKLQGDAIE CGYHGFQFGR DGRCVRVPTM ASPPPISIET FPVREIGPLV
WVYLGDSACL DAVPPPPTMA WMSDPSFAIR QGKTEIAANY LLLKENVLDL THFGYVHAGS
FGITNVVGKL TVTRTDDTVG YEEIFDPAPL PDGLSHAFGI APGTPWSRST KGAFLSPAAQ
YGSASFADPR TPETPNASHQ FAHFTTPIDH EHMHYFYVFG RDYAREPAAM DHFAAMVEKG
FKEDEFVLEQ VQALISRRPR RGSTGERSVK ADAAGVEARR IIERWMQRET IPA