| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_1432 |
|---|
| Symbol | |
|---|
| ID | 5197404 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | + |
|---|
| Start bp | 1572135 |
|---|
| End bp | 1574648 |
|---|
| Gene Length | 2514 bp |
|---|
| Protein Length | 837 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640580979 |
|---|
| Product | regulatory protein, LuxR |
|---|
| Protein accession | YP_001261934 |
|---|
| Protein GI | 148554352 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2909] ATP-dependent transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.00164581 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACGGCCG GCCGCTCCTT CGATCAGCAT GACTGGTTGC GCGATCCTTT GGCGCCGCCG
ATCCTGCTGG TGGAGGCCGG CGCCGGATAC GACAAGACGC GCTGGTGCGA AACGCTGCGG
GACCGGGCGC TGGAAGCCGG GTTCACCACG CTCTTCATCG AGCCCGCGTC CACATCGGCC
AGCCAACTCG GAGAACTGGT CGATGCGGCC GAGCGCGGCG CCGGTCCGTT GCTGCTCGTC
ATCGACGGTT TCGATCGCGC ACCCGACCGG CGGTTCGGCG AAGCGATCGC GGATATCAGC
GCCCGGCAGC GCCCCGGTGA CCGGATCGCC ATCGCCTCGC GGAACCGGAT TGCCATCCGC
TTTCGGCGGC GCTGGATCAG CGGTGGCGCG GCGCGCGTGA ACGAAGCCGC CCTCGGCTTC
GGGCGCGACC AGACCGCCGC GCTGTTCGAG GGGGCCTTGC CCGACAACGC CGTCGACATG
GTGCTGGCAT GGAGCGAGGG CTGGCCTACG GCTGTCGAGG CGGTCCATCT CGGCTGGCAG
CGAAAGCGCA GGACCCACGA CGCGAACGAC ATGGCCCGGC TGATCGATGA GATCTGGCCG
GACGTCGCCT CCTATATCGA AGACGAAATC CTGTCCGATC TCGCCGCACC CCAGCGCGAC
CTGATGATCC GGACCGCCTT CCTCGAAACC TTCGACGGCG ATCTGGCCCA TAAGCTCACG
GGCGATGCCT CGACCTGGGA TGTTCTGGAC CAGCTCGTCG ATCGTCATGT GCTGGCGGCG
GACGAGGGTT CCGATCCCTC CTATCGCTGC CATCCCCTTG TGCGCCGCCG ATTGGAGAGC
GATCTCCGCA AGCGCGGCGG AGAGTTTCGC CATCTGGCAC GAAAGGCCGC CCAGATCTTC
TGGCAGCGGC AGGACGTGCA GCGGGCCATC ACCTGCGCCG ATCTCGCCGG TGACGGCGCC
CTGGCCGCCC GCTGGGCGCT GTCGCTCGAC ACGGCGATGT TCGGCGTCTC CCGCGGCGGC
AGGGAACTGC GCGAGGTCAT GCAGCATGTC CCGGTCGACA TTCTCGAAAC CAAACCGCGC
CTGGCCCTTG CCCATGCCTT CCTGGCCGCC AAAAGCGGCC GGATCGATGT CGCCGATCGC
ATCCTGCAGC ATGTCCGCAC GACGGAGCTG AATGGCGCCG CCGGATCCGA CCGGCTGCTC
GCCCGCGACA CGGCGATCGT CGAGGTGGCC ATCGCCATGT ATGACGGCCG CGGCTTCGGC
GGGCCGGCGC TGGCCGCGCT CGATATGATC GAAGCGGTCA GCTACGGCGA CGAGGGCATT
CGCGGCTTCG TGGAGAATGT CCGATGCGCC ATCGCTTTCG ATGCCAGCGA CTTTCCCGAA
GCCCTCGCCC GCTATCGCAA CGCGCTTCAT TTCTACACCT GCCAGAACGC CACCAATGGA
CTCGGCTACA TCCATCTCCA TTCGGGCAGG ATCTACGCGG AAATGCTGAA CATCGAGGCC
TGCGCACGGG CCTATGACCA TGCCCGGCAG CTCTTTCTGG AACAGCGCCC GCAGGACGAG
CAGTCGCTGC GATTGATCAA GCCGCTGCAG GCCCGGCTTG CCTATGATCA GGGCCGGTTC
GAGGAGGCGC AACGCCTCAG CGACGGCTTT GCGGCGGAAG TCGGCCAGGG CGGATATTAT
TGGGACGCCC TCTATCTGGG CTTCCGCACG GCGGCGAAGC TGGCCGCCCG CCGTCATGGC
GACGCCGATG CGCGGCGGAC GCTCGACGGA GCGATCGAGT TCGCCCGGCT GAACCGGATC
GGCCATCTCG AACATCTCCT CCTGCTGGAA CGAGCGGCCC TCGCGCCGGA AAGCGACGAT
GTCGCGCACC TGCTCGATCG CGGGCCGCTT CACGCAGCCT CCCCTCTTCC CTGGCGCATC
CGCGATCTTC GCGCGGTCGT ACGGGCGCGC CGCGACGCCA TGGCCGGCGA CCTCGACGGA
GCCCTCGCCC GTCTCTTCGC CCAACTGGAC GAATGCCATG TCCAGGGTCG CCAGCGGTCG
CGGATCGACC TGTTGATCGC GGCCTCCCTG CTGCTCGATC AGGGACAGCG GCGCGAGCGT
GCGATCGACA TGTTGCACGA GGCGACCCGG CTGGCGCGCA AGGGCCATAT CGTGGCCCCC
TTCATCGAGA ATGGACGGGA TGCCCTGGCG CTGTTGTCCC TGCTTGCATC GGGGGCTGTC
GACGGCAATG GGGCAGGGAT CGGCAACGAC CCGTTCGTCA GCCAGGTCCT TGCGCTCCAG
GACGAGGCGC CATCGGGGCC CGCGACCCTC CTGAACCAGC GCGAGCGCGA CATATTGCGC
CACCTGGCCG AGGGCATGAG CAACAAGCTG ATCGCCCGGC AGCTCAACAT CTCGCCCGAG
ACGGTGCGCT ATTATCTGAA GGGCATCTAC GAGAAATATG GCCTGCACGG CGGCTATGCC
AATCGCCGCG CGCTGGCCCA TTTCGTGACG CAGACCAGCG CCACGCACCA CTGA
|
|---|
| Protein sequence | MTAGRSFDQH DWLRDPLAPP ILLVEAGAGY DKTRWCETLR DRALEAGFTT LFIEPASTSA
SQLGELVDAA ERGAGPLLLV IDGFDRAPDR RFGEAIADIS ARQRPGDRIA IASRNRIAIR
FRRRWISGGA ARVNEAALGF GRDQTAALFE GALPDNAVDM VLAWSEGWPT AVEAVHLGWQ
RKRRTHDAND MARLIDEIWP DVASYIEDEI LSDLAAPQRD LMIRTAFLET FDGDLAHKLT
GDASTWDVLD QLVDRHVLAA DEGSDPSYRC HPLVRRRLES DLRKRGGEFR HLARKAAQIF
WQRQDVQRAI TCADLAGDGA LAARWALSLD TAMFGVSRGG RELREVMQHV PVDILETKPR
LALAHAFLAA KSGRIDVADR ILQHVRTTEL NGAAGSDRLL ARDTAIVEVA IAMYDGRGFG
GPALAALDMI EAVSYGDEGI RGFVENVRCA IAFDASDFPE ALARYRNALH FYTCQNATNG
LGYIHLHSGR IYAEMLNIEA CARAYDHARQ LFLEQRPQDE QSLRLIKPLQ ARLAYDQGRF
EEAQRLSDGF AAEVGQGGYY WDALYLGFRT AAKLAARRHG DADARRTLDG AIEFARLNRI
GHLEHLLLLE RAALAPESDD VAHLLDRGPL HAASPLPWRI RDLRAVVRAR RDAMAGDLDG
ALARLFAQLD ECHVQGRQRS RIDLLIAASL LLDQGQRRER AIDMLHEATR LARKGHIVAP
FIENGRDALA LLSLLASGAV DGNGAGIGND PFVSQVLALQ DEAPSGPATL LNQRERDILR
HLAEGMSNKL IARQLNISPE TVRYYLKGIY EKYGLHGGYA NRRALAHFVT QTSATHH
|
|---|
| |