| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_1060 |
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| Symbol | |
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| ID | 5197814 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | - |
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| Start bp | 1180655 |
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| End bp | 1181446 |
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| Gene Length | 792 bp |
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| Protein Length | 263 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 640580605 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001261564 |
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| Protein GI | 148553982 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 42 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.0474443 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCGGAT CGCTGGAAGG GCGCGTCGCC CTCGTCACCG GCTGCACCGG CGGGATCGGC
AAGGTGATCT CCTCGGCGCT GGCCGAGGCC GGCGCGACGG TGGTCGGCGC CGACATGCTC
GACGACGGCG GCGCCTTCAC CGGGGCGGTG CCGAACGGCC GCTACCTCAA GCTCGACGTC
ACCGACGAGC AGGACTGGCG CAAGGCGATC GGCGCGATCG ACGCCGAGCA TGGCCGGCTC
GACATCCTCA TCCATGTCGC GGGGATCGTC GTGGTCGAGA AGATGGTCAA CACCACGCTC
GAACAATGGC GGCGGCAGAT GGCGGTCAAC GTCGACGGCC CGTTCCTGGG CACCAAGGCG
GCCGCCGATC TGATGGCGCG GACCGGCGCG ACCCTGCCGC ACGGCAGCTC GATCGTCATC
ATCTCCTCGG TCGCGGGGTT GATCGGATCG CCGCTGCACG CCGGCTATTG CGCGTCGAAG
GGGGCGGTCC GCCTGTTCGC CAAGGCCTGC GCGATGGAGT TCGCGGCGCT GGGGCAGAAG
ATTCGCATCA ACACCGTCCA CCCCTCGGGG GTGCGGACCG GCATGGTCGA CCACATCCTG
CAGCGCTTCG TCGACGAGGG CTTCTTCGCC TCGATCGAGG ATGCGGAGAA GGGGATGGCG
CCCGCCCATC CGATCGGCCG CATGGCCGAC CCGATCGACG TCGCCAAGGC GGTGCGGTTC
CTGGCGTCGG ACGAGTCCGG ATACATGCTC GGCTCCGAGC TGGTCGTCGA CGGCGGCTTC
ACCGCGCAAT GA
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| Protein sequence | MIGSLEGRVA LVTGCTGGIG KVISSALAEA GATVVGADML DDGGAFTGAV PNGRYLKLDV
TDEQDWRKAI GAIDAEHGRL DILIHVAGIV VVEKMVNTTL EQWRRQMAVN VDGPFLGTKA
AADLMARTGA TLPHGSSIVI ISSVAGLIGS PLHAGYCASK GAVRLFAKAC AMEFAALGQK
IRINTVHPSG VRTGMVDHIL QRFVDEGFFA SIEDAEKGMA PAHPIGRMAD PIDVAKAVRF
LASDESGYML GSELVVDGGF TAQ
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