Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_0989 |
Symbol | |
ID | 5199734 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | + |
Start bp | 1098719 |
End bp | 1101061 |
Gene Length | 2343 bp |
Protein Length | 780 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640580535 |
Product | TonB-dependent receptor |
Protein accession | YP_001261494 |
Protein GI | 148553912 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.220833 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGCCAT TCCTCACATC GGGTGCGAGC GATCGGGCGC TCGGCCTCGC GCTGGCTGGC GCGGCGCTGC TCGCGGCGGC CCCGGCCGTC GCGCAGGAGG CATCCGGCAG TTCGGACACG ATTGAAGAGA TCGTCGTCAC TGCCCAGAAA AGAAACGAGA ATATGCAGTC GACGCCGATC GCGATCTCGG CCTTCACCGC CGACGCGATC AGCCGCAAGG GGCTGTCCGA CATCCAGCAG GTGTCGCGCC TCGCGCCCAA CGTCTCGTTC GACTTCACCT CCCCGATCAG CGGCGCGTCC AACGCGGCGT CGGTGTTCAT CCGCGGCATC GGCCAGCAGG ATTTCGCGCT GACCACCGAT CCCGGCGTCG GCACCTATGT CGACGGCGTC TATGTCTCCC GATCGGTCGG CGGCGTGCTC GACGTGCTCG ACATCGAGCG GATGGAGATC CTCCGCGGGC CGCAGGGGAC GCTGTTCGGC CGCAACACGA TCGGCGGCGC CATCTCGATC ATCTCGAAGA TGCCGGAGAA GGAATTCGGC GGCTCGCTCG AAGCCTCGCT CGGCAATTAT GGCCGCCGCT ATCTGCGCGG TTCGGTCAGC CTGCCGCTCG GCCCCGACAC GGCGGTCCGT ATCTCGGTTT CCTCCAAGGA TAAGAACGGT TTCGTCAAGT CTGCTTATAC ACCACAGCAG AAGTCGCTGC TCGGCGGAAC GCCGCTGACC GACCTCGGCA ACGAGAACCG GCAGGCCGCG CGGATGGTGC TGGTCCATGA TTTTTCGGAC CGGTTCAAGG CGACCCTGTC GGGCGACTAT AGCCGCCTGC GCGAGAACAA CGCCGCCGAC CGGCTCGCCG GGATCACCGG CACGCTGGCG GACGGGCCGC TGGTCTTCGC CTACAACACG TTCGGGTCGA CGCCCTCGGT CATCCCGGTG ATCGGCAACG ACCGCTACGT CCCGGCCAAC TACATCACCG GCCGCGACCG GACCTATTCG ACCGGCCCGA ACGGCAGCAG CATCGACGCC TGGGGCACCG CGCTGACGCT CGACTTCGAG GCGAGCGAGA GCCTGTCGAT CAAGTCGATC ACCGCCTATC GCAAGACCAC CGGATCGTTC AACCGCGACG CCGACGGATC GCCGCTGGTG ATCACCGAAA CCTCCAACTA CGGCTATCGC CACAAGCAGT TCACCCAGGA ATTGCAGGCG GTCGGCGACG TCGCCGACGG CGCGGTCAAA TATGCCGCCG GCCTGTTCTA TTTCGACGAG AAGGGATCGG ACCCGCTGGT CGTCCGCCTG CCCGAGGTGG TCGGCACCAT CTACCAGGAC ATCGCCGACG TCCGGAACAA GAGCTACGCC GCCTATGCCC AGGCGACCTG GACGATCGTC GACGGCCTGT CGCTGACCGC CGGCGGGCGC TACACCAAGG ACAGGAAGCG CTTCGTCTCC GACCAGTATA TCGTCACCGG ATCGGCCTCG CCCTTCCTGT TCGGCGGCGC GCCGGCCGGC ACGCTGATCC CGCTCGTGCC CCGCAACTCG GTCACCACCC AGTCGTTCGA GAAATTCTCG CCGCGCGCGA GCGTCGACTA TCGGATCGGC GACGTGCTGG TCTACGGCTC CTACAGCAAG GGCTTCAAGA GCGGCGGCTT CAACCTGCGC TACGTCGCGC CGCGCCCGTC GGTGCTGTCC TTCGGCCCGG AAAACGCCAC CACCTTCGAG GTCGGCACCA AGATCGACGC GTTCGACCGC AAGCTCCGCC TCAACCTCGC CGCCTTCACC ACCGACTATA AGGGCATCCA GGTCACCGTG TTCGAGAATC TCGGCGCGCC GGTGACGCTC AACGCCGGCG ACGCGCGGAT CAAGGGGTTC GAGGCGGAAC TGACCGCCAT CCCCCTCCCC GGCCTCGAGC TCACCGCCAA TCTCGGCTAT CTCGACAGCC ACTACACTGC GATCCGCGCC AATCCGGCGC TGGTCAGCAC GCCCGAGCAG ATCATCAGCC GCTCGACCCG CCTGCCCAAG GCGCCCGAAT GGCAGGGGAC GATCAGCGCC GCCTACACCT ACACGCTGGG CAACGACGCC AGGCTCGACG CGCGGGCGGA CTTCCACTTC TCGTCGCGCT ACGCCAACGA CGCGGTCAAC TCGCGCTTCC TCAACCAGAA GGCCTATCAG ACGCTCGGCC TGTCGGCGGG CTACACCGCG CCCGACCGCC GCTGGTCGCT GCGCCTGTTC GTCGACAACC TCACCGACGA GCGCTACATC GTCTCGGGCG ACAGCAATTA CGGCATCGGC TTCCACGAAG CCAACTACAA CCGCCCCCGC GAATGGGGCG CGACGCTGGG CTTCAACTTC TGA
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Protein sequence | MKPFLTSGAS DRALGLALAG AALLAAAPAV AQEASGSSDT IEEIVVTAQK RNENMQSTPI AISAFTADAI SRKGLSDIQQ VSRLAPNVSF DFTSPISGAS NAASVFIRGI GQQDFALTTD PGVGTYVDGV YVSRSVGGVL DVLDIERMEI LRGPQGTLFG RNTIGGAISI ISKMPEKEFG GSLEASLGNY GRRYLRGSVS LPLGPDTAVR ISVSSKDKNG FVKSAYTPQQ KSLLGGTPLT DLGNENRQAA RMVLVHDFSD RFKATLSGDY SRLRENNAAD RLAGITGTLA DGPLVFAYNT FGSTPSVIPV IGNDRYVPAN YITGRDRTYS TGPNGSSIDA WGTALTLDFE ASESLSIKSI TAYRKTTGSF NRDADGSPLV ITETSNYGYR HKQFTQELQA VGDVADGAVK YAAGLFYFDE KGSDPLVVRL PEVVGTIYQD IADVRNKSYA AYAQATWTIV DGLSLTAGGR YTKDRKRFVS DQYIVTGSAS PFLFGGAPAG TLIPLVPRNS VTTQSFEKFS PRASVDYRIG DVLVYGSYSK GFKSGGFNLR YVAPRPSVLS FGPENATTFE VGTKIDAFDR KLRLNLAAFT TDYKGIQVTV FENLGAPVTL NAGDARIKGF EAELTAIPLP GLELTANLGY LDSHYTAIRA NPALVSTPEQ IISRSTRLPK APEWQGTISA AYTYTLGNDA RLDARADFHF SSRYANDAVN SRFLNQKAYQ TLGLSAGYTA PDRRWSLRLF VDNLTDERYI VSGDSNYGIG FHEANYNRPR EWGATLGFNF
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