| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_0935 |
|---|
| Symbol | |
|---|
| ID | 5200803 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | + |
|---|
| Start bp | 1042597 |
|---|
| End bp | 1044036 |
|---|
| Gene Length | 1440 bp |
|---|
| Protein Length | 479 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 640580481 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_001261440 |
|---|
| Protein GI | 148553858 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGACGC CTTCGCCCGG CTCCGCGACG CGGCCCCGGC CGCCGACCGG CCGGCGCTCG
ACCTGCTCGT CGGGCACGAG ATCGCCCTCC AGCGCTTCGG CGAGGCGAGC CTCGCCGGCG
ACCACGATCC GAACGAACCG CTCCGCCGCG CGATCGCCGC CGCCGAGCGC CACCTGTCCG
TCCGGTCCTG ATCCGGGCCC ACCTTCCTTC GAAAGCATCG CCATGACCTC TCGTCCCGCT
GCCCGAACGT CCGACAGCAT CGCGCTCATC CTCGCCGTCG CGGTGGCGAG CGGCATCGCC
CATCTCGGCA CCTCGACCAT GCCCTTCCAG GTCGGCGCGC TGATGGACGG GCGCGGGCTC
AGCGCCAGCC TGGCCGGCGT GTTCGGCCTG TTCGAGATCG GCGCGCTGGC GATCTCGATG
ATCCTGCTGT CGCCGGTCGT GCACCGCTTC TCCTCGGTGA CGATCTCGCT GGCCGGCGCG
GCGCTCGCGG CGCTCGCCCA TGCGATCATG TTCCTGATCC CGGCGACCTT GCCGCCGCTG
CTCGCCTGCG CGACGCTGGC CGGCATCGGC TATGGCCTGG TGTTCGCGGC GGCGATCACC
GGCGCGTCGA CCGCGCGCAA TCCCGACCGG GTCTATGCGC TCGGCAATGT CGGGGCGATC
CTGTTCATCG TCGTGATGAT GATGGTCATC CCGCTCGCCA GCGCCCGGCT CGGCGCGATG
GGCGCCTTTC CGGCGATCGC GGCGCTGATC CTGGTCGTGT CGCCGGCGAT GCTGCGCTTC
CGGTCGCGGC CCGCCCTGCT GACGCCGCCG CCGGCGCGCG TCCTGTCGCA ACCCGCCACC
ATCGCGCTGC TGGTGATGTG GGCCTGCTAT TCGCTCGGCA CCGGCGCGCT GTGGAGCTTC
GCCGAACGGA TCGGCACCCG CCTCGCCATC GATCCCGAGA TGATCGCGAC GATCCTGTCC
GCCAGCACCG CCTGCGGGGT GCTGGGCAGC GTCGTCGCGG CGCTGATCGG CGGCCGCCTG
CCGCGCGTGC CGGCGATGCT CGTCGGCCTT GCCGGCACCG CGCTGTCCTG CGTCCTGATG
GGCTATGCGG ACGGGACGGT CAGCTTCGCG CTGGGCGTGC TGACCTACTG GATCTTCTAC
ATGTACCAAT ATGCGCTGTT CCTCGGCACC GCGGCGATGT TCGACGCGGA GGGACGGCTC
GGCACGCTCG GCGGCGGATG CGAGCGGCTC GCCTTCGCGG TGGGCGCGCC GATCGGCGGG
CTGATCGTCG ACCATGGCTC GTTCGGCATG CTGGGCCTGC TCGGCTTCGC GAGCTGCCTC
ATCACCATCC CGGTCTGCAT GCCGATCGTC GCCCGTACCC TGCGGCAACG GGCCGCCGCC
GCGACCGACC GATCGCATGA AAGTCCCGAC CGATCGACTG AATACGCGCC CGCACCCTGA
|
|---|
| Protein sequence | MSTPSPGSAT RPRPPTGRRS TCSSGTRSPS SASARRASPA TTIRTNRSAA RSPPPSATCP
SGPDPGPPSF ESIAMTSRPA ARTSDSIALI LAVAVASGIA HLGTSTMPFQ VGALMDGRGL
SASLAGVFGL FEIGALAISM ILLSPVVHRF SSVTISLAGA ALAALAHAIM FLIPATLPPL
LACATLAGIG YGLVFAAAIT GASTARNPDR VYALGNVGAI LFIVVMMMVI PLASARLGAM
GAFPAIAALI LVVSPAMLRF RSRPALLTPP PARVLSQPAT IALLVMWACY SLGTGALWSF
AERIGTRLAI DPEMIATILS ASTACGVLGS VVAALIGGRL PRVPAMLVGL AGTALSCVLM
GYADGTVSFA LGVLTYWIFY MYQYALFLGT AAMFDAEGRL GTLGGGCERL AFAVGAPIGG
LIVDHGSFGM LGLLGFASCL ITIPVCMPIV ARTLRQRAAA ATDRSHESPD RSTEYAPAP
|
|---|
| |