| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_0928 |
|---|
| Symbol | |
|---|
| ID | 5200515 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | + |
|---|
| Start bp | 1032677 |
|---|
| End bp | 1033567 |
|---|
| Gene Length | 891 bp |
|---|
| Protein Length | 296 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640580474 |
|---|
| Product | polysaccharide deacetylase |
|---|
| Protein accession | YP_001261433 |
|---|
| Protein GI | 148553851 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0726] Predicted xylanase/chitin deacetylase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 0.686986 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACCGCC TCACCGTTTG CCTGACCTTC GACGTCGATG GCATGTCGTC CTGGATCGGC
ACGGCAAAAA GCCGGAACCC CAGCATGTTG TCGCGCGGCG ACTTCACCGT GGTGGCGACG
CCGCGCCTCC TCGACCTGCT CAGGAAGCTC GACATCCGCG GCAGCTTCGC CGTGCCCGGC
CACACCGCCT ATGCCTTTCC CGACATGGTC AAGCGCATCC GCGACGAAGG CCATGAGATC
GTCCACCATG GCTGGGTCCA CGAGAACCCG GCCGACTTCG ACGAGGCCGG CGAGCGACGC
GTGCTGGAGA AGGGCCTGAC CGCGCTCGAC CGCGCGGCCG GGGTGCGTCC GACCGGCTAT
CGCTCCCCCG CCTGGGACTT CAGCCCGGCG ACGGTGAAAC TGCTGCTCGA ATATGGCTTC
CTCTACGATT CGAGCTGCAT GGGCCATGAT TTCGAAGCCT ATTATCTCCG TACCGGTGAT
GATTGGGGGC CTGATGAACC CTATCGGTTC GGTCCGACCG TCGATCTGGT GGAGCTGCCG
GTGAACTGGG CGCTCGACGA TTTCCCGGCG TTCGAGTTCG TCCTCGGCAT GAACCCGGCC
GGCGTCATCC CCGAGGATCT CGGGCGGACC TGGAAGGCCG ATTTCGACTT CGCGCTCGAA
CGCTGCCCGG GGGGCATCTT CAACCTCACC AACCATCCCG AGACGATCGC GCGCGGCAGC
CGCCTGGCGA TGCTCGAAAG GCTGATCGAC CATATGCGCG GCCAGGCCGG CGTCGTGTTC
GACACGCTGG GCTCCTATGC CGCGAAGTGG AAAGCCGCCA ACCCGCTCGA CCAGTGGAAG
GCCGCCAACC CGCTCCGCAC CGGGGCGAAC GCGATCGTGC AGGCCGATTG A
|
|---|
| Protein sequence | MDRLTVCLTF DVDGMSSWIG TAKSRNPSML SRGDFTVVAT PRLLDLLRKL DIRGSFAVPG
HTAYAFPDMV KRIRDEGHEI VHHGWVHENP ADFDEAGERR VLEKGLTALD RAAGVRPTGY
RSPAWDFSPA TVKLLLEYGF LYDSSCMGHD FEAYYLRTGD DWGPDEPYRF GPTVDLVELP
VNWALDDFPA FEFVLGMNPA GVIPEDLGRT WKADFDFALE RCPGGIFNLT NHPETIARGS
RLAMLERLID HMRGQAGVVF DTLGSYAAKW KAANPLDQWK AANPLRTGAN AIVQAD
|
|---|
| |