Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_0924 |
Symbol | |
ID | 5200550 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | - |
Start bp | 1025098 |
End bp | 1027485 |
Gene Length | 2388 bp |
Protein Length | 795 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640580470 |
Product | TonB-dependent receptor |
Protein accession | YP_001261429 |
Protein GI | 148553847 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCAGCC AGCGACGCCG CGCCTTCCGG CGGGGACTTA CCCTGTCCGC AGCCCTGATC GGGATCATCG CCGTTCCGGC CCATGCCCAG GCGGCCGACG ACGCCGTCGC CGAGGGGGAG ATCGTCGTCA CCGCCAACAA GCGCACCCAG GCGCTCAAGG ACGTCGGCGT GACGGCGGCC GTGCTCGGCG CGCAGCAGCT CACCGAGCGC AAGATCGTGT CGCTGGCCGA CATCGCCGCG ACGGTACCGG GCCTGTCCTA TTCGTCGAGC GAGAACAACA CCCCTGTCTT CACGCTGCGC GGCGTCGGTT TCAACGAGGC GTCGCTCGCG GCTTATCCCA CGGTCAGCGT CTATACCGAC GAGGCGCCGC TGCCCTTCCC GGTGCTGTCC GCGCAGGGCG CGTTCGACCT CGACCGGATC GAGGTGCTGA AGGGGCCGCA GGGCACGCTG TTCGGCCAGA ACTCGACCGG CGGCGCGATC AACTATATCG CCGCCAAGCC GACCGACACG CTCTCCGCCG GGGCCGACCT CAGCTATGGC CGCTTCAACA TGGTCGAGGC GAACGGCTTC GTCAGCGGTC CGCTCGGCGA GCAGCTCAAG TTCCGCCTCG CCGGCCATTA TCTGCACGCC GACGACTGGC AGAAGAGCTA TACCCGCAAG GACAGCCTGG GCGAGTCCGA GGTCTATGCG GTGCGCGGGC TGCTCGACTG GGAGCCGGCC GACACGGTCA AATTCTCGCT CATGCTCAAC GCCTGGCAGG ACAAGTCCGA CCCGCAGGCG GGCCAACTCG TCGCGGTCTA TCCGCAGATC GCGGCGGCCG CCTATCCCGA GGTGGTGAAC TATCCCTATC CGCCGCAGAA CGCCCGCGCC GCCGACTGGT CCAACGGCAC GACGGTCAGC CCCACCGGCT CGATCCTCGA TCCGCGGCCG CGATCGAACC GCAAATTCCA GCAGGCGGTG CTGCGCGGCG ACATCGACCT GACCGACCAG GTCACGCTGA CCTCGCTCTC CTCCTACCTC CATTTCCGGC AGCGGCAGAG CCAGGACTAT GACGGCACCG CCAGCAACAA TGACGACATC CCGTTCAACG ACGGCACGAT CAAGTCGGTG TTCCAGGAAC TGCGCCTGTC GAACGGCGGC CGATCGTCGA TCCGCTGGGT GCTCGGCGCC AATTACCAGC GCAGCCGCAT CCGCGAGAAT GACGGGATCA GCTATTCGAC CGGCAGCACC AGCAATGCCG GGCTGAACTT CATCATCCAG AACGGCTATC GCAGCAATAC GCTGCGCCGC GACTATGCCT TCTTCGGCAA TGCCGAGGTC GACGTCGCGC CGGGCCTGAC GCTGAAGGCC GGCGCGCGGT ACACCAACAG CCTGACCGGC GTGAACCTGT GCAACACCGA CCTCGGCGAT GGCCGGACCG CGGCGCTGAT CTCCGGTCTC TCCGCGCTGC TGACCGGCGG GCCGGCGCCG GTGGTGCGCC CCGGCATCGA CTGCGTGACG CTGAACAGCA GCTTCCAGGT CGGCCAGCCC TTCATCGACT CGCTGAAGCA GCACAACACC TCGTGGCGCT TCGGCGTCGA CTACAAGCTC AACCGGGACG TGCTGCTCTA CGCGAACGTC TCGCGCGGCT ACAAGGCGGG CAGCTATCCG ACGATCAGCG CCTCGTCGGA GGCGCAATAT ATCCCGGTCA CCCAGGAGAG CGTCACCGCC TATGAGGCCG GCGCGAAGCT GACCACGGCG GACCGGACGT TCACGACCAA CGTCGCCGCC TTCTACTACG ACTATCGCAA CAAGCAGATT CGCGGGAAGA CGCTCGATCC GATCTTCGGC GTGCTCAACG CGCTGATCAA CGTGCCGAAG TCGCGCCTCT ACGGCGCCGA GATCGAAGCG GGCGTGCGGC CCTTCCGCGG CCTCGCCCTC GGCGCGTCGG TGACCTATGT GAACTCGAAG GTGCAGCGCT ACACCGGCAC CAACGTGCTG GGCGTCCAGC AGGATTTCGC AGGCTCGTCG ATTCCCTTCT CGCCCAAGTG GCAGGCCCAG GTCGACGGCG AATATCGCTG GGACATGGGC GGGGTGACGC CGTTCGTCGG CGCGGTGCTG AACGTCCGGG CGAAGACGAT CGCCTATATC GGCGGATCGG ACCTCACCAT CCCCGCGTCG CCCGTCAACA GCATGGCGCC GGGCGTCACC AGGCCCTTCG CGATCAAGGG CTACGAGACC GTCGACCTGC GCGCCGGCGC GGAATGGGGC CAGTGGAAGG CGATGATCTG GGGCAAGAAC GTCTTCGACA CATATTATTG GCAGAACGTC ATATCGGCGT TCGACACCGT CTATCGGCTT GCGGGCCGGC CGGCCTCCTA CGGCGTGACC GTGGGGTATA AATTCTAG
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Protein sequence | MTSQRRRAFR RGLTLSAALI GIIAVPAHAQ AADDAVAEGE IVVTANKRTQ ALKDVGVTAA VLGAQQLTER KIVSLADIAA TVPGLSYSSS ENNTPVFTLR GVGFNEASLA AYPTVSVYTD EAPLPFPVLS AQGAFDLDRI EVLKGPQGTL FGQNSTGGAI NYIAAKPTDT LSAGADLSYG RFNMVEANGF VSGPLGEQLK FRLAGHYLHA DDWQKSYTRK DSLGESEVYA VRGLLDWEPA DTVKFSLMLN AWQDKSDPQA GQLVAVYPQI AAAAYPEVVN YPYPPQNARA ADWSNGTTVS PTGSILDPRP RSNRKFQQAV LRGDIDLTDQ VTLTSLSSYL HFRQRQSQDY DGTASNNDDI PFNDGTIKSV FQELRLSNGG RSSIRWVLGA NYQRSRIREN DGISYSTGST SNAGLNFIIQ NGYRSNTLRR DYAFFGNAEV DVAPGLTLKA GARYTNSLTG VNLCNTDLGD GRTAALISGL SALLTGGPAP VVRPGIDCVT LNSSFQVGQP FIDSLKQHNT SWRFGVDYKL NRDVLLYANV SRGYKAGSYP TISASSEAQY IPVTQESVTA YEAGAKLTTA DRTFTTNVAA FYYDYRNKQI RGKTLDPIFG VLNALINVPK SRLYGAEIEA GVRPFRGLAL GASVTYVNSK VQRYTGTNVL GVQQDFAGSS IPFSPKWQAQ VDGEYRWDMG GVTPFVGAVL NVRAKTIAYI GGSDLTIPAS PVNSMAPGVT RPFAIKGYET VDLRAGAEWG QWKAMIWGKN VFDTYYWQNV ISAFDTVYRL AGRPASYGVT VGYKF
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