| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_0916 |
|---|
| Symbol | |
|---|
| ID | 5200611 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | + |
|---|
| Start bp | 1012778 |
|---|
| End bp | 1014343 |
|---|
| Gene Length | 1566 bp |
|---|
| Protein Length | 521 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640580462 |
|---|
| Product | peptidase dimerisation domain-containing protein |
|---|
| Protein accession | YP_001261421 |
|---|
| Protein GI | 148553839 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCCGCA CCACCGCCCT CGCCCTCGCC CTCTCGGCGC TGTCGATGAC GGCCGTCGCC
CATGCCGAAC CCAAACGGCC CAGCTTCCCG TTCACGACCG ACGTCGCCTA TGACGCGTCG
AAGGTCGCGC CCTACAAGGG CAGGCACGCC GCCGCCTACG CCTATATCGA CGCCAACAAG
GACCGCGACG TCGCCAACGT CCAGCGCTGG GTGCGGCAAC GCTCGATCAG CGCGCAGAAT
GACGGCGTCG TCCAGATGGC CGAGATGCTG CGCGACGACC TCAAGGCGCT GGGCTTCAAG
GAGGCGGAGC TGGTCCCCAC CAAGCGCCAT CCCGGCGTCT GGGGCTATTA TGACGCCGGC
GCCAAGACCA CCATCGCCGT CTACATGATG TACGACGTCC AGCCGATCGA GCCGACCGGA
TGGAAGGTCG ACGCCTTCGC CGGCACGATC GTCGAGGATC ATCCGCTCGG CCGCGTGCTG
ATGGCGCGCG GCGCGACCAA CCAGAAGGGG CCGCAGCGCA TCTTCCTCAA CGCGCTGCAG
GCGATCATCG CGACCGAGAA GAAGCTGCCG GTCAACATCA TGCTGCTGGC CGAGGGCGAG
GAGGAGCTGG GCTCGCCCCA TTATCCCGAC CTGATCGCCA AATATGCCGA CCGGCTGAAA
CAGGCCAAGG GCGGCGTCGT CTTCCCGATG ATGAGCCAGG CGCCGTCGGG CGGCGTGCAG
ATGACGCTGG GCGTCAAGGG CAACATCTAT TTCGAGCTGG AGGCGCAAGG CGGCCCGCAG
GGCGGCCCCA AGGACGCCGA GGTCCACAGC TCGTTCAAGG CGATCGTCGA CGCGCCCGGC
TGGCGGCTCG CCCAGGCGCT GGCGAGCCTG ACCAGCCCCG ACGGCAATAT GATCGTCGTT
CCCGGCTATT ATGACTCGAT CCGCCAGCCC AACCAAGAGG AACAGGAGCT GATCAACGGC
GTCGTGCCCG GCTGGACCGC GCGCGAGCCC GAGCTGCGCA AGTCGCTGGG CGTCGACAAG
TGGATCGACG GCCTGAGCGG GCGCGCGGCG ATCACCGAAT ATCTGTTCGA CACGACGCTG
AACATCGACG GCATCTGGGG CGGCTATTCG GGCGAAGGCA CCAAGACGAT CCTGCCGCAC
AAATTCACCG CCAAGCTGGA TTCGCGGCTG GTGCCGAACC AGACGCCCGA CGAATCCGAA
CGGCTGATCC GCGCCCATCT CGATGCCAAG GGCTTCACCG ACATCAAGCT GACGCGCCTC
TCCGGCTATC CGCCGGCGCA ATCCTCGGTG AAGGCGGCGC TGGTGCAGGC GACGATCGGC
ACCTATCGCA AATATGGCAT CACCCCCGAC GTGATGCCGC GGCTGGCCGG TAGCGCGCCC
TATTATGTGT TCACCGATAT CCTGAAGCTG CCGATCGTCT CGGCCGGGAT CGGCTACGGC
ACCGGCGCGC ATGCCCCGAA CGAGTTCATC GTGATCGATC CCAAGCCGGG GTCGAAGCTG
GCGGGCATCA CCGACGCGGA GAAATTCTAC GTCGACCTGG TCCACGCCGT CGCGGCGGCA
CGCTGA
|
|---|
| Protein sequence | MIRTTALALA LSALSMTAVA HAEPKRPSFP FTTDVAYDAS KVAPYKGRHA AAYAYIDANK
DRDVANVQRW VRQRSISAQN DGVVQMAEML RDDLKALGFK EAELVPTKRH PGVWGYYDAG
AKTTIAVYMM YDVQPIEPTG WKVDAFAGTI VEDHPLGRVL MARGATNQKG PQRIFLNALQ
AIIATEKKLP VNIMLLAEGE EELGSPHYPD LIAKYADRLK QAKGGVVFPM MSQAPSGGVQ
MTLGVKGNIY FELEAQGGPQ GGPKDAEVHS SFKAIVDAPG WRLAQALASL TSPDGNMIVV
PGYYDSIRQP NQEEQELING VVPGWTAREP ELRKSLGVDK WIDGLSGRAA ITEYLFDTTL
NIDGIWGGYS GEGTKTILPH KFTAKLDSRL VPNQTPDESE RLIRAHLDAK GFTDIKLTRL
SGYPPAQSSV KAALVQATIG TYRKYGITPD VMPRLAGSAP YYVFTDILKL PIVSAGIGYG
TGAHAPNEFI VIDPKPGSKL AGITDAEKFY VDLVHAVAAA R
|
|---|
| |