| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_0911 |
|---|
| Symbol | |
|---|
| ID | 5200728 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | + |
|---|
| Start bp | 1004060 |
|---|
| End bp | 1004893 |
|---|
| Gene Length | 834 bp |
|---|
| Protein Length | 277 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 640580457 |
|---|
| Product | 4-oxalocrotonate decarboxylase |
|---|
| Protein accession | YP_001261416 |
|---|
| Protein GI | 148553834 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG3971] 2-keto-4-pentenoate hydratase |
|---|
| TIGRFAM ID | [TIGR03220] 2-oxopent-4-enoate hydratase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 37 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.625128 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGACG AACATTCGCG CCTCGCCCCA TCGGCGATCG AGCGGTGCGC GCTTAGGCTG
CGCGAAGCCC ATGGCCGGCT GGAGCCGGTC CCGCCGCTGC GGACCGAATA TCCGGCCGCC
CGGCTGTCCG ACGCCTATGC GATACAGGAT TGCAACACGA CGCATTGGCT CGATGCCGGC
CGCGTCGCGG TCGGCGCCAA GATCGGCCTG ACGGCGAAGG CGGTTCAGAA GCAGCTCGGC
GTGGACCAGC CCGATTTCGG CATCCTGTTC GCGGACATGG AAGTGCCCGA CGGCGGGGTG
GTGAGCCCCG GGCGGCTCAT CCAGCCCAAG GTCGAAGGCG AGATCGCGTT CGTGCTCGAC
GCGACGCCCG ATGCCGACCG CATGACGACG GCCGAGCTGA TCGACTGCGT CGCTTATGCC
CTGCCCGCGC TGGAGATCGT CGACAGCCGC ATCGCGAAGT GGGACATCGG CATCTTCGAC
ACCGTTGCCG ACAACGCCTC CTCGGGCCTG TTCGTCCTGG GGACGCGCCC GGTCCCGCTC
GAAGCGATCG ACCTGCGGCT TTGCGGCATG GTCCTCGAAA AGAACGGCGA GCCGGCCTCG
TTCGGGGCGG GCGCCGCCTG CCTGGACAAT CCCCTGCACG CCTTGCGCTG GCTGGCCGGG
ACGATGGCCC GGATCGGGCG GCCGCTCGCC GCCGGGGATA TCGTCCTGTC CGGCGCGCTC
GGCCCGATGG TCCCGGTCCG GGCCGGCGAC CGCATCGCCA TGCGGATCAA CGGAATCGGG
GACGTTCAGG TCCGTTTCGC CCCGGAAAGC AGCGAAGGAG CAGCGCATGG CTGA
|
|---|
| Protein sequence | MSDEHSRLAP SAIERCALRL REAHGRLEPV PPLRTEYPAA RLSDAYAIQD CNTTHWLDAG
RVAVGAKIGL TAKAVQKQLG VDQPDFGILF ADMEVPDGGV VSPGRLIQPK VEGEIAFVLD
ATPDADRMTT AELIDCVAYA LPALEIVDSR IAKWDIGIFD TVADNASSGL FVLGTRPVPL
EAIDLRLCGM VLEKNGEPAS FGAGAACLDN PLHALRWLAG TMARIGRPLA AGDIVLSGAL
GPMVPVRAGD RIAMRINGIG DVQVRFAPES SEGAAHG
|
|---|
| |