| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_0873 |
|---|
| Symbol | |
|---|
| ID | 5197696 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | - |
|---|
| Start bp | 966323 |
|---|
| End bp | 966946 |
|---|
| Gene Length | 624 bp |
|---|
| Protein Length | 207 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 640580418 |
|---|
| Product | PBP family phospholipid-binding protein |
|---|
| Protein accession | YP_001261378 |
|---|
| Protein GI | 148553796 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1881] Phospholipid-binding protein |
|---|
| TIGRFAM ID | [TIGR00481] Raf kinase inhibitor-like protein, YbhB/YbcL family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 0.547082 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.369253 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTTGAAC ATCTTCCCCG CTGGCTGGGA GCCATGCTGC GCAATGTCCG CGCAGGCCAT
TCGAAGCTGG TGATCGCCCA GCCCGAGCTG GAGATCGGCG ATGCGGTGAT CGACCTGAGC
AGCCCGGCCT TCGCGTCGGG CGCGCGGCTG CCGGTGCGCT TCACCGCGGA CGGCGAGGGC
GTGTCGCCGC CGCTGCTGTG GGGAGAGGTT CCGCCGGGCA CCGCCAGCCT CGCGCTGATC
GTCGAGGATC CCGACGCCCC GGCGCTCCAG CCGCTGGTCC ATGCGCTCGT CTGGAACATC
CCGCCCGACG AACGGCACCT GCCCGAGGGA GCGATCGTCG CCGACGGCGA CGGCGCATCC
GCAGGGCCCG ACGTCGGCCG CAACAGCCTG TTCGAAGGCT GGCTGCCGCC TGATCCGCCG
AGCGGACATG GCAGCCACGA CTATGTCTTC CAGCTCTTCG CGCTCAGCGA AACGATCGAG
GTCGGTCCCA ATCCCGGCCG GTCGGGGCTG GTGCGCGGGT TGCAGGGGCG GGTGCTCGGC
GCCGGCATGC TGGTCGGCAC CTATTCGCGC GGCGAGGAGG CTCCGCTCGG CGGGCAGGGC
GTCGCGGGCG CGTCGCCGGC CTGA
|
|---|
| Protein sequence | MLEHLPRWLG AMLRNVRAGH SKLVIAQPEL EIGDAVIDLS SPAFASGARL PVRFTADGEG
VSPPLLWGEV PPGTASLALI VEDPDAPALQ PLVHALVWNI PPDERHLPEG AIVADGDGAS
AGPDVGRNSL FEGWLPPDPP SGHGSHDYVF QLFALSETIE VGPNPGRSGL VRGLQGRVLG
AGMLVGTYSR GEEAPLGGQG VAGASPA
|
|---|
| |