| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_0833 |
|---|
| Symbol | |
|---|
| ID | 5197691 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | - |
|---|
| Start bp | 926712 |
|---|
| End bp | 929426 |
|---|
| Gene Length | 2715 bp |
|---|
| Protein Length | 904 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640580377 |
|---|
| Product | regulatory protein, LuxR |
|---|
| Protein accession | YP_001261338 |
|---|
| Protein GI | 148553756 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2909] ATP-dependent transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTACAAT TTCCGGCCGG ATCGCGAAAA CGCGGAAAGC GGGACGACCA GGCACGAAGC
CGCATTGGGA GAGCTGGCCG ACCCATGGAC ATTGTTTCTC GATATCGCTT CACGCCGCCG
ATCCCGCAAC GCAGCTTCAT CCCTCGCGCC ATCGCTTCGC GGATATCGCG GTCGCCCTAT
CCGCTGACCT TCCTCGCCTC GCCCAGCGGT TTCGGGAAGT CGACGCTGAT GGCGCAGGCC
TTCGATCTCG CCCGCTCGGA AGGCGAAAGC GCCCGCTGGC TGAATCTCTA TCATCGCGCC
GCCGGGGCGG AGGGCTTTTC GCACTATCTC TGTCTTTCGC TGAAGGACGA CGGCGAAGCG
CAGGACATCG CCCCCGGCGC GGGGCCGTTC GGGATCGACG ACCTGCTCGC CGAGGTGGAC
GCGACCTGTC GGCGGGACGG ATCGGTATCG CTCTATCTCG ACGAGGTGGC GCCCGGCGAT
CTCGACACCG TGCTCGGCCT CTCCCAGATG ATCGGCAAGC ATTTCGGCGA CAAGGCGAAG
CTGGTCGTCT CCTCGCGGGT CGCGCCGCCG CGGTTGGCCG GCGTGCTGGG CGACGGCGGG
ATCATGTACA CCCCGGCCGA ACTCGCCTTC TCGCCCGCCG AGGTGGCCGA GCTGTTCGAC
GGCGGCCTGC CCGAACGCGA CGTTGCCGCG CTGGTCGCGA CCACCGGCGG CTGGCCCGCG
CTGATCGCGT CGGTGCGGCA TGGGACGGGG CATTCGCCGG CCGATCACAG CCTCGGCACG
GGCGGCGAGG CGGGCGACAT GATCGCCGAT TTCGTCCGCG ACCTGATGGA CGTCGCGCCG
TCGTCGCGCG ACATCGAGGT GCTGGCGGCG GCCTTCGCCT TCGGCAACGC CACCGCCCCG
ATCTTCGAGC ATGACGATTT CGCGAGCGCG GGCGAGATCG TCACCCGCCT CGCCCGCGAC
GGGCTGGTCA AGGTCCGGTC GGAAGGCACG CGGCTGGTCT ATGAACCCCA CGCCGCGGTG
CGCTTCGCGG TCGATCGGCT CGGCCGCCGT TCCTCGCAGA AGCGCATGCT GGACATCCAC
CGCTCGCTGT CGACGTCGCT GGTCGCCAGC GGCGACCGGG TCGGAGCGAT CCGCCATGCG
CTGGAGACCG GCGACCTCGA CCTGCTCTGC GACCTGATCG AGGCGGGCGG CGGCTGGCTG
CTGATCCTGC AATGGGGCGC ACCGATCCTC GATGCCGTCA ACGCGATCCC GATCGGTCGG
CTCGGCGGCC GGCCGGCGAT GCTGCTGACC AAGGTCTATG TGCTGATGCA GGCGCGCGCG
ATCGGCGAGG CGCGCCAGCT CCTCGACGAG ATATCGACAG ACCTGGAGCC CGCCAGCTTC
CCCGACGACG AAGCGTTCCA CAGCTTCCAG ATCGGCTATG GCCTGATCGA CGGCGTGTTG
CGGTCCTATG AGATGCGGCC GATCGACTTT CCCGCGCTCG AACGGCTTCG CGACCATGGG
CCGGCCGACA TCCGCAACAT CGCCGACGCG ATGATCCTCA ACCTCAAGGG CGGCTACCAG
CTTCGCGACG GGCTGCTCGT CGAAGCCGAG GCGACCGGCC GCGAGGCGAC GCTCAAATGC
CAGGCGGCCA AGGCGACCTT CGTCGAGGCC TATGTCCAGC TCTGGCTGGG CCATGCGCAT
CTCCAGAGCG GCAACACCCG CGACGCGAGC CGGCGCTTCG CGGCGGTGCT CGATATCGCC
GAGAACTGCT TCGGTGCCGA TTCCAACCAG ATGATCGCCG CCAAGGTCTT TCTGGCGGAA
CTCGAATTCG AACGCGGCGA GGCCGAGCGG GCCTATGCGA TCATCGAGGC GGTGTTCGAC
CGGATCGAGG AACTCGACCC CTGGTATGAG ATGCTTCGGC CCTTCTACCG GATCGCCTCG
ATCCGGGTGC AGAATCGGGA GGGCACCGAG CGGGCTATCA GCTTTCTCGA CACGGCGCTG
GACCGGATGG AGAACCGCAA TCTCGGCCTG CTGTCGCGCT ATCTGCGCTC GCTCCGCGCC
GAGATGCTGG TGCAGAGCGA GCGCGACATC CAGGCGATCG AACGCGGGGT GGGGGAGCTT
CAGCACGTCG AGCCGATCGA GAGCGCCTTC CTCAACGTCC GGGTCGGGCT CAAGCGCGGC
GACGTGCCCG CCGCGCTGGC CGGCGTCGAT GCGCTGCTCG ACCAGCCCGC GGTCCGCGAA
TGCGCGCGCC GGATGATCAC CGTCACGGTG CTGAAGGCGG CCTGCCACGC GGCGCGCGGG
GAGGTCCGCG CCGCCGGCGA TCTCGTCGCC GAGGCGCAGA GGCTGGCGAC GCAGAGCGAC
CTGCGCGGCC ATTTCGAACA TGAGGTCGCC TCCAGCGAAG GCGCGGTGGG CGGGGCTCCG
CTGCTCCGGC CCGATCCGGG GCGGCAGGCG ATGGCGCGCC TGCCGGCGCC GCGCGGGGAG
CTGATCGAGG TCGATGACCG CAGCCTGCCC CGCCTCGGCC CGCGCGAGCG CGAGGTGCTG
GACTGCATCG TCGAAGGGCT GTCGAGCAAG GAGATAGCCT GGCGGATGTC GCTCTCGGTC
GGGACGGTGC TGGGCTATCG CAAGAGCCTC TACCGCAAGA TCGGCGTCAA TTGCCGCTCG
GCGGCGATCT CCTATGCGCG GCAGTCGAAC ATCGCGGCCT ATGCCGATGC CGTGGAGGTC
GAAAGCCTGC AATAG
|
|---|
| Protein sequence | MVQFPAGSRK RGKRDDQARS RIGRAGRPMD IVSRYRFTPP IPQRSFIPRA IASRISRSPY
PLTFLASPSG FGKSTLMAQA FDLARSEGES ARWLNLYHRA AGAEGFSHYL CLSLKDDGEA
QDIAPGAGPF GIDDLLAEVD ATCRRDGSVS LYLDEVAPGD LDTVLGLSQM IGKHFGDKAK
LVVSSRVAPP RLAGVLGDGG IMYTPAELAF SPAEVAELFD GGLPERDVAA LVATTGGWPA
LIASVRHGTG HSPADHSLGT GGEAGDMIAD FVRDLMDVAP SSRDIEVLAA AFAFGNATAP
IFEHDDFASA GEIVTRLARD GLVKVRSEGT RLVYEPHAAV RFAVDRLGRR SSQKRMLDIH
RSLSTSLVAS GDRVGAIRHA LETGDLDLLC DLIEAGGGWL LILQWGAPIL DAVNAIPIGR
LGGRPAMLLT KVYVLMQARA IGEARQLLDE ISTDLEPASF PDDEAFHSFQ IGYGLIDGVL
RSYEMRPIDF PALERLRDHG PADIRNIADA MILNLKGGYQ LRDGLLVEAE ATGREATLKC
QAAKATFVEA YVQLWLGHAH LQSGNTRDAS RRFAAVLDIA ENCFGADSNQ MIAAKVFLAE
LEFERGEAER AYAIIEAVFD RIEELDPWYE MLRPFYRIAS IRVQNREGTE RAISFLDTAL
DRMENRNLGL LSRYLRSLRA EMLVQSERDI QAIERGVGEL QHVEPIESAF LNVRVGLKRG
DVPAALAGVD ALLDQPAVRE CARRMITVTV LKAACHAARG EVRAAGDLVA EAQRLATQSD
LRGHFEHEVA SSEGAVGGAP LLRPDPGRQA MARLPAPRGE LIEVDDRSLP RLGPREREVL
DCIVEGLSSK EIAWRMSLSV GTVLGYRKSL YRKIGVNCRS AAISYARQSN IAAYADAVEV
ESLQ
|
|---|
| |