| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_0760 |
|---|
| Symbol | |
|---|
| ID | 5198012 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | - |
|---|
| Start bp | 839984 |
|---|
| End bp | 840562 |
|---|
| Gene Length | 579 bp |
|---|
| Protein Length | 192 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640580304 |
|---|
| Product | TetR family transcriptional regulator |
|---|
| Protein accession | YP_001261265 |
|---|
| Protein GI | 148553683 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1309] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.0913287 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.16222 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGCGGA CGCAGGCGGC CGATTATGAG GAACGACGCG AGGCGATCGT CGAGAAGGCG
GCCGAGCTGT TCGCCGAGCG CGGCTTCCTG GGCGCGTCGG TGTCGGACAT CGCCAAGGCC
TGCAAGACCT CCAAGTCGTT GCTCTACCAT TATTATCCGT CGAAGGAGGA CGTGCTCTAC
GCGGTCATGG CCTCGCATAT CGACGGGCTG GTGGACAGCG TCGAGACCGC GATGGGCGAA
GCCGGCGCGG CGCGCGATCG TCTGCGCCGG CTGCTGCGGC TATTCATGGC CGATTATGTC
GGCGCGGCGT CGCGGCAGAA GGTTCTGTTG AACGAGCTCG ACAACCTGCC GCAGGACCGG
CGCGCGGCGA TCATCGCCAA GCAGCGCCGC ATCGTCGACA CGGTGCAGGC GCTGCTGGTC
GAGATCGATC CCGCGCTCGC CGGGGACAAG GGCGAGGCGC GGGTGCGGAC CATGCTGCTG
TTCGGCATGA TCAACTGGAC CGGCAACTGG TACGACCCCG CCGGCCCGCT CAAGCCCGAG
GCGATCGCCG ACCGCGCCTT CGACCTGATC GCGGGGTAA
|
|---|
| Protein sequence | MARTQAADYE ERREAIVEKA AELFAERGFL GASVSDIAKA CKTSKSLLYH YYPSKEDVLY
AVMASHIDGL VDSVETAMGE AGAARDRLRR LLRLFMADYV GAASRQKVLL NELDNLPQDR
RAAIIAKQRR IVDTVQALLV EIDPALAGDK GEARVRTMLL FGMINWTGNW YDPAGPLKPE
AIADRAFDLI AG
|
|---|
| |