| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_0748 |
|---|
| Symbol | |
|---|
| ID | 5198090 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | - |
|---|
| Start bp | 828154 |
|---|
| End bp | 830181 |
|---|
| Gene Length | 2028 bp |
|---|
| Protein Length | 675 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 640580292 |
|---|
| Product | bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase |
|---|
| Protein accession | YP_001261253 |
|---|
| Protein GI | 148553671 |
|---|
| COG category | [C] Energy production and conversion
[I] Lipid transport and metabolism |
|---|
| COG ID | [COG1012] NAD-dependent aldehyde dehydrogenases
[COG2030] Acyl dehydratase |
|---|
| TIGRFAM ID | [TIGR02278] phenylacetic acid degradation protein paaN |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.778513 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCAAGA CGCTCAACAA CTATGCCGCC GACCAGTGGG TGGCGAGCAC CACCGAGAAG
CTGCCGGTGC TGTCGGCGAT CGACGGCTCG CCGGTCGCCC AGGCGGGCAG CGCGGGACTC
GATTTCGCGG GCATGCTGCG CCACGCGCGC GATGTCGGCG GCCCGGCGCT GCGCGCGATG
ACCTTCCACG CCCGCGCCCG CATGCTCAAG GCGCTGGCGC AGGCGATCAT GGCCCGCAAG
GAGGAGCTCT ACGCGCTCTC CGCCTCGACC GGCGCGACCC GCGTCGACAG CTGGATCGAC
ATCGAGGGCG GCGCCGGCAC GCTGTTCACC ATGTCCTCGC GCGGCCGGCG GGAATTGCCC
GACGACGTCG TCCTGATCGA TGGCGACCTC GAGCCGATCG GCAAGAACGG CACCTTCGTC
GGCCAGCACG TCTATACCTC GCTGCAGGGC GTCGCGGTCC ACATCAACGC CTTCAACTTC
CCGGTTTGGG GGATGCTCGA GAAGCTCGGG CCGACGCTGC TCGCGGGCGT TCCCGCGATC
GTCAAGCCGG GCACCGCGAC CTGCCACGTC ACCGAGCATG CCGTCCGCAT CATGATCGAG
GCGGGCGTGC TGCCGGCCGG CGCGCTCCAG CTCATCGTCG GCGGGGTCGG CGACCTGCTC
GACCATCTGA CCTGCCAGGA CGTCGTCTCC TTCACCGGAT CGGCGGCGAC CGCGATGAAG
CTCCAGTCGC ACCCCGTCAT CGCGCGGGAG TCGGTGCGCT TCGTGGCCGA GCGGGATTCG
CTCAACGCCT CGATCCTCGG CCCCGACGCC GCGCCGGGCA CGCCCGAGTT CGACCTGTTC
GTCAAGGAGG TCGCGCGCGA GATGACGGTG AAGACGGGGC AGAAGTGCAC GGCGATCCGC
CGCGCCTTCG TCCCCGCCCA GTGGCTCGAC GCCGCCGAGG AGGCGCTGAA GGCCCGGCTC
GGCAAGGTCG TGGTCGGCGA TCCGGCGCAG GAGGGCGTCA CCATGGGCCC GCTCGCCGGC
ATCACCCAGC TCAACGACGT TCGTGCCAAG GCGCGTGAGC TGGCGACCGA GGCGAAGCTC
GTCTTCGGCG ACATCGACAC GGTCCAGGTA CAGGGCGCCG AGGCGGCCAA GGGCGCCTTC
GTCTCGCCGC TGCTGTTCCG CCGCGACGAT CCCTGGACGG CGAAGCTGGT CCATGACGTC
GAGGCGTTCG GCCCGGTCTC GACGCTGATG CCGTACAAGG ATTTCGACGA CGCGATCGCG
CTGGCCAATC GCGGCCTCGG CTCGCTCGCG GTGTCGCTGT TCACCTATGA TCCGCAGGTC
GCGCGCCAGT TCGTGATCGG CGCCGCCGCC TATCATGGCC GCATCGTCAT CCTCGATCGC
GACAGCGCCA AGGAATCGAC CGGCCACGGT TCGCCGCTGC CGATGCTGAT CCACGGCGGT
CCCGGTCGCG CCGGCGGCGG TGAGGAGATG GGCGGCGTCC GCGGCGTGAA GCATTATATG
CAGCGCAGCG CTCTCCAGGG CCATCCGCGC AGCCTGAGCG TCGTCGCGGG CCGCTACCTG
GCCGGCGCGC CGCAGCCGGA GGGCGAGGTC CACCCGTTCC GCCAGCGCTT CGGCGAGCTG
CAGATCGGCT ACACGCTGCG CACCGCGCCG CGCACGATCA CGCTCGACGA TATCGAGCAT
TTCGCCCATT TCACCGGCGA CACCTTCTAT GCGCACATGG ACGAGGAGGC GGCCGCGGCC
AATCCCTTCT TCCCGGGCCG GGTGGCGCAC GGCTATCTGA TCCTGTCGTT CGCGGCGGGC
CTGTTCGTCG ATCCGGCGCC GGGCCCCGTC CTCGCCAATT ACGGCCTGGA AGGGCTGCGC
TTCGTCAAGC CGGTGTCGCC CGGCGAGGCG ATCAAGGTCG CGCTGACCGT CAAGAGCAAG
ACCCAGCGCA ACGACGAATA TGGCGAGGTC CGCTGGGCGG TCACGGTCAC CGACTCCGCC
GACGAGCTGG TCGCGACCTA CGACCTGCTG ACGATGAACG CGATCTGA
|
|---|
| Protein sequence | MTKTLNNYAA DQWVASTTEK LPVLSAIDGS PVAQAGSAGL DFAGMLRHAR DVGGPALRAM
TFHARARMLK ALAQAIMARK EELYALSAST GATRVDSWID IEGGAGTLFT MSSRGRRELP
DDVVLIDGDL EPIGKNGTFV GQHVYTSLQG VAVHINAFNF PVWGMLEKLG PTLLAGVPAI
VKPGTATCHV TEHAVRIMIE AGVLPAGALQ LIVGGVGDLL DHLTCQDVVS FTGSAATAMK
LQSHPVIARE SVRFVAERDS LNASILGPDA APGTPEFDLF VKEVAREMTV KTGQKCTAIR
RAFVPAQWLD AAEEALKARL GKVVVGDPAQ EGVTMGPLAG ITQLNDVRAK ARELATEAKL
VFGDIDTVQV QGAEAAKGAF VSPLLFRRDD PWTAKLVHDV EAFGPVSTLM PYKDFDDAIA
LANRGLGSLA VSLFTYDPQV ARQFVIGAAA YHGRIVILDR DSAKESTGHG SPLPMLIHGG
PGRAGGGEEM GGVRGVKHYM QRSALQGHPR SLSVVAGRYL AGAPQPEGEV HPFRQRFGEL
QIGYTLRTAP RTITLDDIEH FAHFTGDTFY AHMDEEAAAA NPFFPGRVAH GYLILSFAAG
LFVDPAPGPV LANYGLEGLR FVKPVSPGEA IKVALTVKSK TQRNDEYGEV RWAVTVTDSA
DELVATYDLL TMNAI
|
|---|
| |