Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_0709 |
Symbol | |
ID | 5198182 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | - |
Start bp | 778817 |
End bp | 781189 |
Gene Length | 2373 bp |
Protein Length | 790 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640580253 |
Product | TonB-dependent receptor |
Protein accession | YP_001261214 |
Protein GI | 148553632 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.072981 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 4 |
Fosmid unclonability p-value | 0.00423974 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAATTATC GCCATGCAAA GATGATCTTG CTGTCGGGTT GCGCCATCGC CCTTTGCAGC GGTCTGCAAC CGGCCGCCGC GCAGGTCGAG GAAGAAGGCG CTCGCTCGGG CGGGCTCGAG GATATCGTCG TCACGGCGCG CCGTCGGGCG GAATCGGTGC AGACGACGCC GCTGTCGGTG TCGGCCTTCG ACTCCCGCTC GCTCCAGGAT CGCGGCTTGC AGAACATCGC CGACGTCTCG CGCGCCGTGC CGAACGTCCA GCTCGATCCG GTCGCCAACG AATCCGGCGT TGCGTCGACC CAGATATCGA TCCGCGGCAT CGGCCAGACC GACTATGTGC TGACCGTCGA GCCCGGCGTC GCCGTCTATC TGGACGGCGT CTATGTCGGC AAGTCGCTCG GCTCGCTGCT CGACACGGTG GACGTCGAGC GCGTCGAGAT CCTGCGCGGC CCGCAAGGCA CGCTGTTCGG CAAGAACACG ATCGGCGGCG CGATCCAGGT GATCACCAAG CGCCCGACCG CCGACAACCA GGCCGAGATG GAACTGACCA CCGGGCGCTA CGACCGGCTC GACGCGCGCG GCGCGATGTC CGGCCCGATC ACCGACTGGC TGCGCTTCCG CCTGTCCGCC TCCTATCAGA GCCGCGACGG CTTCATGAAG CGCATCCTGC GCAGCGGCGA GCGGACCGGC GAGGTCCAGG GCGACATGAA CCGGCTGGGC GGGCGGCTCG TCTTCGAAGC CGACGTCGCC CCGAACCTGC TGGCGACGCT GGCCTTCGAC GGGACGCGCA TCCGCGAGAA GTCGCCGGCG ACCTATCTGC GGCGGGTGAC CGAGGATGCG GGCTTCCCGC GCCTGTTCAA CCTGGCGGTG CCGGGCGGCG TCTGCGCGCC GGCGGCGGGG GCGTCGCGCT TCTCCAACCC CTATTGCTTC AACGACCAAT ATTCGCTGCC GACCGACACG CGCGTCACCT ACAATGCCGG CGGCAACACG GCCGACACCG ACGTGCGGGG CGTCGCCCTG ACGCTCGACT GGAAGCCGGG CGACATCAAC GTCAAGTCGA TCACCTCGTT CCGCAAGGTC GACGTGTTCG TCGACCAGAA CCTCGGCGGC AGCGCCTATT ACAACAGCCA GGTCGGGCAG GACATCGACT TCAAGTCGTT CAGCCAGGAA TATCAGCTCA GCGGCAACCT GCTCGACAAG CGGCTGTCCT ACGTCCTCGG CGCCTATTAC CAGCGCGAAT GGGGGCGGCA GCTCTTCCCG GTCCAGACCG CGCTCGCGCA GTTCCTGTCG GGCGGCGACA TCAAGAACGA CAGCTATGCC GCCTTCGGCC AGCTCACCTA TGAGATCACC AGCAGGCTCT CGCTGACCGG CGGCTTCCGC TACACCTATG AGACGCGCCG GTTCAATCCG GGCCTCCAGC ACGTCATCGG CTATGACGAC CTGTCGGTGA TCAAGATCCC GGGCTTCGTG AATCCCGTCG CCAACGCCTT CGGCACGCCC GGCACGCCGC TGTTCCCGGC GGGCTGGTAC AAGCGCAACA GCAAGGCCGG CACGCCGATG ATCTCGCTGA GCTACAAGCC GGTCGACGAC GTGATGCTCT ATGCGACCTA TTCGAAGGGC TTCAAGGGCG GCGGCTTCAC CATGCGCTTC TTCCCGCCGG TCAAGCCGGC GGCGGGCGTC GATCCCGATA CGCTGATCCC CTATGCCAAG CCCGAAAAGG CGACCTCCTA CGAGGCCGGC ATCAAGAGCG AGTGGCTCGG CGGCAAGCTG CGCCTGAACG TCGCCGGCTT CATCACCGAC TACAACAACA TCCAGGTCAC CTACACGATC GATCCGGACG GCCCGGGCCC GATCGGCCGC TTCCTGCCGG TGCTTGCCAA TTCGGGTTCG GCCCGCATCA AGGGCATCGA GGTCGAGAGC GCGGCGGTGC CGACCGACTG GCTGCGGATC GACGGCAGCC TCGGCTATAT CGACGCCAAA TACCGCAAGT TCACCGCGGC GGCGATCGGC GCCTATCCCG CCGCGCTGGG CTTCGACCTG CCCAACACGC CGAAATGGAC CTATAATGTC GGGACGACGG TGACCTTCTT CGACAATGAG TCGGGCAATG TCTTCCTGCG CGCCGACTGG GCCTATCGCA GCAGCCAGTT CAAGGAGTTC TCGAACAACC CGTCGCTGTT CCAGAAGGGC TACGGCATCC TCAACGCGGG GCTGACCTAC CGGTCCGCCG ATCGGAACTG GGACGTGACG CTGGGCGGCA CCAACCTGAC CGACAAGGCC TATATCGTCA GCGGCGTCGC CAGTTCCGAT CGCGCGCAGG CGGTGCGGTC GCGGCCGCGC GAATGGTATC TGACGCTGCG GCACAAGATA TGA
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Protein sequence | MNYRHAKMIL LSGCAIALCS GLQPAAAQVE EEGARSGGLE DIVVTARRRA ESVQTTPLSV SAFDSRSLQD RGLQNIADVS RAVPNVQLDP VANESGVAST QISIRGIGQT DYVLTVEPGV AVYLDGVYVG KSLGSLLDTV DVERVEILRG PQGTLFGKNT IGGAIQVITK RPTADNQAEM ELTTGRYDRL DARGAMSGPI TDWLRFRLSA SYQSRDGFMK RILRSGERTG EVQGDMNRLG GRLVFEADVA PNLLATLAFD GTRIREKSPA TYLRRVTEDA GFPRLFNLAV PGGVCAPAAG ASRFSNPYCF NDQYSLPTDT RVTYNAGGNT ADTDVRGVAL TLDWKPGDIN VKSITSFRKV DVFVDQNLGG SAYYNSQVGQ DIDFKSFSQE YQLSGNLLDK RLSYVLGAYY QREWGRQLFP VQTALAQFLS GGDIKNDSYA AFGQLTYEIT SRLSLTGGFR YTYETRRFNP GLQHVIGYDD LSVIKIPGFV NPVANAFGTP GTPLFPAGWY KRNSKAGTPM ISLSYKPVDD VMLYATYSKG FKGGGFTMRF FPPVKPAAGV DPDTLIPYAK PEKATSYEAG IKSEWLGGKL RLNVAGFITD YNNIQVTYTI DPDGPGPIGR FLPVLANSGS ARIKGIEVES AAVPTDWLRI DGSLGYIDAK YRKFTAAAIG AYPAALGFDL PNTPKWTYNV GTTVTFFDNE SGNVFLRADW AYRSSQFKEF SNNPSLFQKG YGILNAGLTY RSADRNWDVT LGGTNLTDKA YIVSGVASSD RAQAVRSRPR EWYLTLRHKI
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