| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_0604 |
|---|
| Symbol | |
|---|
| ID | 5200480 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | - |
|---|
| Start bp | 658835 |
|---|
| End bp | 660028 |
|---|
| Gene Length | 1194 bp |
|---|
| Protein Length | 397 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 76% |
|---|
| IMG OID | 640580148 |
|---|
| Product | sporulation domain-containing protein |
|---|
| Protein accession | YP_001261110 |
|---|
| Protein GI | 148553528 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.183465 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGGATGA ACTGGACCGG CCTCACGGCC ACCGCGATCG GCCTCGTGCT GGTTTCCGGG
GCGAGCGCGG CGACCCACAA GCGGGCCGAC CGGCTGATCG CCGGCGCGCG CGAGGCGATG
GCGCGCGGCG TTCCCGCCGC CGCCGTCCGC CAGGCCGAGG CCGCCGTGCG CGAAGCCCCG
CGCGATCCGC AGGCGCGGGC GACGCTGGGG CGGGCCTATC TCGCCGCCGG GCGCTTCCGC
TCGGCCGAGA CGGCGTTCGG CGACGCGCTG GCGCTCGATC CGGCCCAGGC GCGGGTCGCG
ATCAACCGCG CGCTGGCGCA GATCGCGCTG GGCCGGGCGG ACGAGGCCAT GGCCCTGCTC
GACGGCCTGC GCGGCGGCGG CAACGACAGC GACGTCGGGC TGGCGCTGGC GCTGCTCGGC
CGGCCCGACG AGGCTCGGCC GCTGCTGATC GCGGCGGCGC GCGCGCCCGG CGCCGATGCC
CGGATCCGCC AGAATCTCGC CTTCGCCTAT GCCCTCGAAG GGCGCTGGAA CGAAGCGGCG
GCGATCGCCG CGCAGGACGT TCCCGCCGAT CTCGTCGCCG AACGGCTCCG CCGCTGGGCG
ATGGTGGGGC AGTTGCGCGC CGATCCGGCG ATGCAGGTCG GCGCGATGCT CGGTGTCCTG
CCGTCGGCCG ATGCTGGCCA GCCCGAGGCG CTCGCCCTGA TTGCCGAACC TGTCCCGGCC
TCCGCGCCGG TGTTGCTCGC CCATGTTCCG ACGCCGCCCG CGCCGCCACC GCCCCTGATC
GCGCCGCCGC CGGTCCCGCC GAGCGAGCCT GTCGCATCCG CCTTCGCCGG CCCGCCACGG
ATGCGCGCGG CCCGGCCGGT CCTGCTGGCG GCACATGTCG TCCCGGTCCG GCCCGCGCTC
GCCTGGGCCG TCCAGGTCGG CGCCTATTCG ACCGTGGAGC GCACCGAGGT CGCCTGGGCC
GCGCTCGGCC GACGCGCGAC CTTCCTCGCC GATCACATGC CGACCGGCTC GGCCTTCCGC
AGGCGCGGCG TCGTGCTCCA TCGCCTGTCG ATCAGCGGAC TGGCGAGCCG GGCGGATGCA
TCGAAGCTGT GCCGACGGAT ACAGTCGGCA GGCGCGCAAT GCTTCGTCCG CATGGATGGC
GGCGACCGGC CGATGCAATG GGCCCTGCGC GCCAAGGCGG CCGAGCCGGC TTGA
|
|---|
| Protein sequence | MRMNWTGLTA TAIGLVLVSG ASAATHKRAD RLIAGAREAM ARGVPAAAVR QAEAAVREAP
RDPQARATLG RAYLAAGRFR SAETAFGDAL ALDPAQARVA INRALAQIAL GRADEAMALL
DGLRGGGNDS DVGLALALLG RPDEARPLLI AAARAPGADA RIRQNLAFAY ALEGRWNEAA
AIAAQDVPAD LVAERLRRWA MVGQLRADPA MQVGAMLGVL PSADAGQPEA LALIAEPVPA
SAPVLLAHVP TPPAPPPPLI APPPVPPSEP VASAFAGPPR MRAARPVLLA AHVVPVRPAL
AWAVQVGAYS TVERTEVAWA ALGRRATFLA DHMPTGSAFR RRGVVLHRLS ISGLASRADA
SKLCRRIQSA GAQCFVRMDG GDRPMQWALR AKAAEPA
|
|---|
| |