| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_0554 |
|---|
| Symbol | |
|---|
| ID | 5200424 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | + |
|---|
| Start bp | 607807 |
|---|
| End bp | 608712 |
|---|
| Gene Length | 906 bp |
|---|
| Protein Length | 301 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 640580097 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_001261060 |
|---|
| Protein GI | 148553478 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.0255315 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACGCAA AGATAGGCGG CGACACCGAC CGCGCCCGCG CGCTCGAACT GTTCGCGGCG
GTGGCGGCGG AGGGCAGCTT CTCGGCGGCC GGACGGAAGC TGGGCCTCAC CCCGTCGGCG
GTCAGCCGGG CGATCGACCG GATCGAGGCG CGGCTGGGCG TCCGCCTGCT GCTGCGCACC
ACCCGAGCGC TGACCCTGAC GGTCGAGGGG CAGGCCTATC TCGGCGCCGC CCGCCGCATC
CTCGCCGATC TCGACGACGC CGAGCAGGCG ATCGCCGACC AGGGCGCGCC GCGCGGGCGG
TTGCGGGTCA GCGTGTCGCT GGCGCATGGA CGGCAATGCG TCGTGCCGCT GCTCGGCGAC
TTCGTCCGCC TTCATCCCCA TATCCTGGTC GACGTTGGGC TGACCGACCG GGTGGTCGAC
GTCGCCGGCG GACAGGCCGA CGTCGCGATC CGCTTCGGCC CGCTCGCCGA CAGCGCGCTG
ACCGCGCGCA AGCTGGGCGA GACCAGGCGG GTGATCGTCG CTTCGCCCGA TTATCTCGCC
CGCCACGGCA CGCCATCGGT CCCCGAGGAC CTCCACGACC ATGTCTGCCT CAACTTCAAC
TTCCGCCGGG TCGAGCCGGT CTGGCCGTTC CGCAAGGACG GGCGCGATTA TGCGCTGGGC
GTCCGGGGCA GCATCGAGGC GAACAATGGC GAGACGCTCG CCCAGCTCGC CACGGCCGGC
GTCGGCATCA CCCGGGTGGG CGCCTTCAGC GTCGTCGAGC GGATCGCCGC CGGACGGCTG
GTGCCGATCC TCGAGGAATA TAATCCGGGC GACGTCGAGG CGATCCACGC GGTGTTCGTC
GGCGGCGCCA ACACCCCCGC GCGGGTTCGG GTCTTCGTCG ATTTCCTGGC CGAACGGCTG
CGATAG
|
|---|
| Protein sequence | MDAKIGGDTD RARALELFAA VAAEGSFSAA GRKLGLTPSA VSRAIDRIEA RLGVRLLLRT
TRALTLTVEG QAYLGAARRI LADLDDAEQA IADQGAPRGR LRVSVSLAHG RQCVVPLLGD
FVRLHPHILV DVGLTDRVVD VAGGQADVAI RFGPLADSAL TARKLGETRR VIVASPDYLA
RHGTPSVPED LHDHVCLNFN FRRVEPVWPF RKDGRDYALG VRGSIEANNG ETLAQLATAG
VGITRVGAFS VVERIAAGRL VPILEEYNPG DVEAIHAVFV GGANTPARVR VFVDFLAERL
R
|
|---|
| |