| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_0267 |
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| Symbol | |
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| ID | 5196373 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | + |
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| Start bp | 279959 |
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| End bp | 281854 |
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| Gene Length | 1896 bp |
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| Protein Length | 631 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 640579807 |
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| Product | PAS/PAC sensor signal transduction histidine kinase |
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| Protein accession | YP_001260776 |
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| Protein GI | 148553194 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.172451 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.0925086 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTCGGCG CCGTGCGGAT CCGAGGAAAG ATGTCGATGG GCAGGACCAT CCCGGCCGTT
CTCCTCGCCC TGGCGGCGGT GGGCGTCGCC GCCCTGGTCC AGGTCGAGCT GGCGATGTCG
ACCGGCGCGG CGGGCGACTA TCTGCCGCTG ATCGTCGCGA TGCTGGTCGC GGGCCTGACC
GGCGGCAGCG CCGCGGCGGC GATCGCGGCG GTCGCGGCGA CCGGCTTCGT CGTGCTGCAG
GGGAAGGGCG CGCCGCTCGA TCATGCGCGC GCCGCCGACC TCGCCGGCTT CCTCCTGGTC
GCGGCGGTGA TCGTCGGGCT GTCGCGCTCG GTCGAGCGGA CGCGGCGCCG GCTCGCCCAG
GACAAGCTGG AGGGCTATCG CCGCGCGGTC GCGGCGAGCG AGACCGCCGA CGAGCTCAAC
CTGCTGATCG ACGGCGCGAC GGACCATGCG ATCTACATGC TCGACCCCGA CGGCCGGGTG
ACGATCTGGA ACAAGGGCGC CGAGCGGCTG ATGGGCTGGA GCGAGGCCGA GGCGGTCGGG
CAGCCGATCG CCTTCTTCTA TCCGCCCGAG GCGGTGGCGG CGGGCAAGCC GGCGGCGGAC
CTCGACCGCG CCCGGCAGGA GGGCCGCTTC GAGGAGGAGG AATGGCGCAT CCGCAAGGAC
GGATCGCAAT TCCTGGCGCA TATGTCGCTG ACCGCGCTCT ATGACGAGCA TCGCCAGCTG
CGCGGCTTCG GCAAGGTGAT CCGCGACGTG ACCGAGCAGC GCGCGGTCGA GCGGCAGCTC
CGCTCCAGCG CCGGGCAGAT GCGATCGATC CTCTCGACCG TTCCCGACGC GATGGTGGTG
ATCGACGCGC GCGGCCTGAT CATCTCGTTC AGCGCCGCCG CCGAGCGGCT GTTCGGCTAT
GCGGAGGCGG AGATGCTGGG CAGCAACGTC AGCCGGTTGA TGCCGTCGCC CTATCGCGAG
CGGCACGATT CCTATCTCGA CCGCTATGCG CGCACCGGCG AGCGCCACAT CATCGGCATC
GGCCGCAAGG TGATCGGCCA GAAGCGCGAC GGATCGACCT TCCCGATGGA ATTGTCGGTC
GGCGAGGCCG AGGCCGGGGG CGAGCCGGTC TTCACCGGCT TCATCCGCGA CCTCAGCGAG
GCGGTGCGGA TGGAGGAGCG GATCGAGGAC CTGCGGTCGG ACCTGATCCA TGTCGCGCGG
GTCAGCGCGA TGGGGACGAT GGCGTCGACG CTGGCGCATG AGCTCAACCA GCCGATCACC
GCGGTGGTCA ACTATGTCGA GACGGTCCGC GACATGCTCG TGGAGCCGAA GGCCGGGGAC
CTGCCCGTCA TCCGCGAGGC GCTGGCGGAA AGCGCGAGCG AGGCGATGCG CGCCGGGCAG
ATCGTCCGGC GGCTGCGCGA ATATGTCGCC CGGGGCGATG TCGAGAAGAC CGTCGAGGAC
CTGCCGGCGC TGATCGACGT CGCCGCCAAG CTGGGCCTGA TCGGCGCGCA GGAACGCGGC
GTCGAGCTGC GCTTCGACGT CGATCCGCTG GCCGGGCCGG TGCTGGTCGA CCGGGTCCAG
ATCCAGCAGG TGCTGATCAA CCTGATGCGC AACGCGATCG AGGCGATGGC CGACAGCCCG
GTCCGCCTGC TGCGGATCGA GACGCGCAGG GAAGGCGACG GCATGGTGCG CGTGACCGTC
GCCGACAGCG GGCACGGCGT CGCGCCGGAG ATCGAGGCAG GCCTGTTCAG CGCCTTCAAC
AGCACCAAGG CGGGCGGAAT GGGGCTGGGC CTGTCGATCT GCCGGACGAT CGTCGAGGCC
AATGGCGGCC GGATCACCTA TGAACGCGAT CCCGGCGGCG GATCGCGCTT TCACTTCACC
CTGTTGGGCT TCACGCCGGA GGACGAGCAT GGATGA
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| Protein sequence | MVGAVRIRGK MSMGRTIPAV LLALAAVGVA ALVQVELAMS TGAAGDYLPL IVAMLVAGLT
GGSAAAAIAA VAATGFVVLQ GKGAPLDHAR AADLAGFLLV AAVIVGLSRS VERTRRRLAQ
DKLEGYRRAV AASETADELN LLIDGATDHA IYMLDPDGRV TIWNKGAERL MGWSEAEAVG
QPIAFFYPPE AVAAGKPAAD LDRARQEGRF EEEEWRIRKD GSQFLAHMSL TALYDEHRQL
RGFGKVIRDV TEQRAVERQL RSSAGQMRSI LSTVPDAMVV IDARGLIISF SAAAERLFGY
AEAEMLGSNV SRLMPSPYRE RHDSYLDRYA RTGERHIIGI GRKVIGQKRD GSTFPMELSV
GEAEAGGEPV FTGFIRDLSE AVRMEERIED LRSDLIHVAR VSAMGTMAST LAHELNQPIT
AVVNYVETVR DMLVEPKAGD LPVIREALAE SASEAMRAGQ IVRRLREYVA RGDVEKTVED
LPALIDVAAK LGLIGAQERG VELRFDVDPL AGPVLVDRVQ IQQVLINLMR NAIEAMADSP
VRLLRIETRR EGDGMVRVTV ADSGHGVAPE IEAGLFSAFN STKAGGMGLG LSICRTIVEA
NGGRITYERD PGGGSRFHFT LLGFTPEDEH G
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