Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_0196 |
Symbol | |
ID | 5196915 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | + |
Start bp | 187508 |
End bp | 191011 |
Gene Length | 3504 bp |
Protein Length | 1167 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 640579735 |
Product | helicase domain-containing protein |
Protein accession | YP_001260705 |
Protein GI | 148553123 |
COG category | [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG0553] Superfamily II DNA/RNA helicases, SNF2 family |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.037499 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGGGGCAC GACTAGAGGA CATCAAGAAC GGCGCATCGG TTCGCGGTAT CGGGTCCGCG CAGCCGGTTC AGGTCGTGTC GGTCGACTGG ATCGGCGACC AGGCGATCAA CGTCGTCTAC CGCGACCATA ATGGCGTGGT CGCCGAGGCC GTTCTCTACC GGGACGATGA GCACCAGCTC GCCGTCGAGC AGGCTGGGCG TCCTTGGTCG TTCGATGCTG ACGGTGCGTT GCTGCGCCTG GTGACCGAGG CCAACCGCAT CAAACTGGCG CATTATTTCG ACCCCTATCT CGCGATCCAC ACGAGCCTTG TTGATCCGTT GCCGCACCAG ATTTCGGCGG TCTATGGCGA GATGCTTCCG CGCCAGCCGT TGCGCTTCCT CCTCGCCGAC GATCCCGGCG CCGGCAAGAC GATCATGGCC GGTCTGCTCA TGAAGGAGCT GATCGCGCGC AGCGATCTCG AGCGCTGCCT GGTGGTTGCA CCTGGCAGCT TGGTCGAGCA GTGGCAGGAT GAGCTCGGTC AGAAGTTCAA TCTCGAGTTC GACATCCTCA CGCGAGACAT GATCGAGACC TCGCGCTCGG GCAATCCGTT CAGTGATCGG GACCGGTTGA TCGTCCGCCT CGACGTGCTG GCGCGCAACG AAGAGCTGCA GGAAAAGCTC ATGAGTGCGC GCGAATGGGA CCTCATCATC TGCGACGAAG CGCACCGGAT GTCGGCGACC TATTTCGGCG GTGAGGTCAA ATATACCCGG CGCTATCAGG TCGGTCAGAA GCTCGGCCAA GTCTGCCGCC ACCTGCTCTT GATGTCGGCG ACGCCGCACA ACGGCAAGGA AGAGGACTTC CAGCTGTTCA TGGCGCTGCT CGACGGCGAC CGCTTTGAGG GGCGGTTCCG CGACGGCGTC CATTATGCCG ACACCGCCGA CATGATGCGG CGGCTGACCA AGGAGGAGCT GCTCAAGTTC GATGGCCGGC CGCTGTTCCC CGAACGGCGC GCCTACACCG TGAAATATGA GCTCTCCGAG GGCGAAGCCG CGCTCTACAC TGCGGTCACC GACTATGTGC GCACCGAGAT GAACCGAGTG CAGCGTTTTG CCGAAGGTGA CGGCAAGAAA CGCAACAATG TCGGCTTCGC GTTGCAGATC CTCCAGCGCC GACTCGCCTC ATCTCCGGCC GCCATCTATC AATCGCTGAA GCGCCGCCGC GAGCGGTTGG AGAACGAGCT GGGCGAAGCG CGCCTTGCCA CGAGAGGGCG TCGCACGGGG ATCGACGAGC CGTCGGTCGG CCCCGACGTG CTGCGCAATA TCGAGGAATA TGGCCAGGAC GAGATCGACG AACTCGAGGA GCTGATCTCA ACCGGCGCGA CGACGGCCGA GACTGTCGAG CAGCTCGCCC TTGAAGTCGA AACGCTGAAG GGTCTGGAAG CAATGGCGCT TGGTGTGTTG CGCTCGGGCG TCGACACCAA ATGGAGTCAG CTCAACCGCA TTCTCGACGA CGATCTGATG GTCGATGCGG CCGGGAATCG TCGCAAGCTG ATCATTTTTA CCGAGCCCAA GGACACGCTC CACTACCTGC TCGACAAGGT GCGCGCGCGC CTCGGTAACG CCGAGGCGGT CGATGTGATT CATGGCGGCG TGTCGCGCGA GGAACGCCGC AAGGTGATCG AGCGCTTCAT GCAGGACAAG GACCTGCTCG TACTGATCGC CAACGACGCC GCCGGCGAAG GCGTCAATCT TCAGCGCGGG CATCTGATGG TCAATTACGA CCTCCCCTGG AATCCCAACA AGCTTGAGCA GCGTTTCGGT CGCATTCATC GCATCGGTCA GACCGAGGTG TGCCACCTTT GGAACCTGGT CGCGGCCGAC ACTCGCGAGG GTGAGGTCTA TGCGCGTCTC CTCGAAAAGC TAGAGGCCGC GCGCGAGGCG CTAGGCGGCC GCGTCTACGA CGTGCTCGGC GAGTTGTTTG AGGGCATAGC GCTCAAGGAC CTGCTCTTCC AAGCGATCCA GTATGGCGAG CAGGATGAGG TGAAGGCGCG GCTGTTCCGG CAAGTTGACG GGGCTGTCGA TCAGGGTCAC TTGCTCGAAT TGCTCCGGCG CCGGGCCCTC ACCAACGACA CCATGCCCGA AGCCAAGGTC GAAGAACTCC GGCTCGAAAT GGAGCGAGCC GAGGCACTGC GCCTGCAGCC GCACCATATC CAGAGCTTCT TCGTCGAGGC GTTCCAGCAT CTGGGCGGGC GCCTCAAGCG CCGCGAGGAA GGGCGCTGGG AAATCACGCA TGTGCCAGTG CGCATCCGCG AGCGCGACCG GCAGATCGGC ACCGGCGCGC CGCTTCAGAA GCAATATGAG CGGATCTGCT TCGAGAAGGG TCTGATCCAC CAGCAGCCGG TCGCCGCGTT TGTTTGTCCC GGCCACCCGC TGCTCGAGGC CGTGATCAGC CTTATCCGCG AGCAATACGA GCAGATCATG CGCCAGGGCG CGATTCTCGT CGACGATACC GATGCCGGCG ACGCTCTCTC GGCGATCTTC CTCTTGGAGC ACATAGTCCA GGACGGCCGC GCGACGAGCG CCGGCAAGCC ACACGTGATT TCGCAGCGAC TCCAGTTCGC CGCGATCGAC AAAGCCGGCG ATGCCCGCAA CGCGGGCATC GCGCCGCACC TTAACCTGCG GCCCGCAACG GCCGAAGAAG CCGGCGTCGT GCGCGATCTG CTCGATGAGG ACTGGCTGAC CAGCGAGCTG GAAAGGACCG CCATCCGCTT CGCCACCGTC GAGCTGGCGC AAGGGCATGT CGCCGAGGTC AAGGCGCGGC GCCTGCCCGA GATTGAGAAG GTCGAGCAGG AGGTCCGCGC CCGGCTCAAG AAGGAGATCA ATTATTGGGA CTCACGCGCC TTCGAGCTCA AGGAGGAAGA GAAGGCCGGC AAGAAGACGC GGCTCAATTG GCAGAATGCC CAGCGACGCG CCGAGGAACT AGCGGAGCGC CAGAAGCGGC GGATGGACCA GCTCGAACGC GAGCGGTTCA TCTCGTCACA GCCGCCGCGG GTGCGCGGCG GCATGGTGGT CATCCCGCGC GGTCTGCTGG AGGCTCGTCA TTCTCCCGCC GTGGCGAACC GTTTCGCCGA GGACCCGGCA GCGCGGCGAG CGATCGAGCT TGCCGCGATG GAAGCAGTCA TGGCCGCCGA GCGCGCGCTG GGACACGCGC CGGTCGACGT CTCTGCCCAG AAGATCGGTT ACGATATCGC CTCGCACGAT CCGAAATCTG GGCATTTGCG CTTCATCGAG GTCAAGGGCC GCATTGACGG GGCGGACTCC GTGATGATCA CGCGCCAGGA AGTCATTACC TCGCTGCACG AGCCAGAGAA GTTCATTCTG GCGATCGTGC CCGTCGCTAG CGGCTTTGCG CATGAGCCGC ACTATGTGCG CGGGGCGCTT GTCGAGCGCG AACCATCGTT CCTCGAGACG GCGATTCAGT TCGACTTGCG GCGTTTGTTG GCGCGGGCGG AGTCACCGCG ATGA
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Protein sequence | MGARLEDIKN GASVRGIGSA QPVQVVSVDW IGDQAINVVY RDHNGVVAEA VLYRDDEHQL AVEQAGRPWS FDADGALLRL VTEANRIKLA HYFDPYLAIH TSLVDPLPHQ ISAVYGEMLP RQPLRFLLAD DPGAGKTIMA GLLMKELIAR SDLERCLVVA PGSLVEQWQD ELGQKFNLEF DILTRDMIET SRSGNPFSDR DRLIVRLDVL ARNEELQEKL MSAREWDLII CDEAHRMSAT YFGGEVKYTR RYQVGQKLGQ VCRHLLLMSA TPHNGKEEDF QLFMALLDGD RFEGRFRDGV HYADTADMMR RLTKEELLKF DGRPLFPERR AYTVKYELSE GEAALYTAVT DYVRTEMNRV QRFAEGDGKK RNNVGFALQI LQRRLASSPA AIYQSLKRRR ERLENELGEA RLATRGRRTG IDEPSVGPDV LRNIEEYGQD EIDELEELIS TGATTAETVE QLALEVETLK GLEAMALGVL RSGVDTKWSQ LNRILDDDLM VDAAGNRRKL IIFTEPKDTL HYLLDKVRAR LGNAEAVDVI HGGVSREERR KVIERFMQDK DLLVLIANDA AGEGVNLQRG HLMVNYDLPW NPNKLEQRFG RIHRIGQTEV CHLWNLVAAD TREGEVYARL LEKLEAAREA LGGRVYDVLG ELFEGIALKD LLFQAIQYGE QDEVKARLFR QVDGAVDQGH LLELLRRRAL TNDTMPEAKV EELRLEMERA EALRLQPHHI QSFFVEAFQH LGGRLKRREE GRWEITHVPV RIRERDRQIG TGAPLQKQYE RICFEKGLIH QQPVAAFVCP GHPLLEAVIS LIREQYEQIM RQGAILVDDT DAGDALSAIF LLEHIVQDGR ATSAGKPHVI SQRLQFAAID KAGDARNAGI APHLNLRPAT AEEAGVVRDL LDEDWLTSEL ERTAIRFATV ELAQGHVAEV KARRLPEIEK VEQEVRARLK KEINYWDSRA FELKEEEKAG KKTRLNWQNA QRRAEELAER QKRRMDQLER ERFISSQPPR VRGGMVVIPR GLLEARHSPA VANRFAEDPA ARRAIELAAM EAVMAAERAL GHAPVDVSAQ KIGYDIASHD PKSGHLRFIE VKGRIDGADS VMITRQEVIT SLHEPEKFIL AIVPVASGFA HEPHYVRGAL VEREPSFLET AIQFDLRRLL ARAESPR
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