| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_0186 |
|---|
| Symbol | |
|---|
| ID | 5199914 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | + |
|---|
| Start bp | 176196 |
|---|
| End bp | 177875 |
|---|
| Gene Length | 1680 bp |
|---|
| Protein Length | 559 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640579725 |
|---|
| Product | recombinase |
|---|
| Protein accession | YP_001260695 |
|---|
| Protein GI | 148553113 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1961] Site-specific recombinases, DNA invertase Pin homologs |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.673106 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGACA ATTCCCCGCA AACGCTCGTG CCGGCAGCGC AGTACCTGCG CATGTCGAAG
GAGCATCAGC GCTATTCGAT CCGAAACCAG GCACGGGCGA TTTCAACCTA TGCTGAGCAG
CATGGGTTCA AGATAACCAA GACCTATACC GACCCCGGCG AGAGCGGCCT CACACTGCGG
GAGCGTCCTG GCCTCCAGGC CTTGTTGGCG GACGTGATCA AGCCATCGCG CCCTTTTGAG
CGGATTCTGG TTCTGGATGT GAGCCGCTGG GGCCGATTCC AGAACCTCGA TCAAAGCGGC
CACTACGAGT TCATCTGCTT CGAAGCGGGT GTACCCGTCA TCTACTGCGC GGAACCATTC
GACAATGACG GTACGCCGGT GATGGCGCTG CTGAAGCAGA TCAAGCGTCT CCAGGCCGCG
GAATACAGCC GGGAGCTGTC GAGCAAGGTT CTTTACGCGC AGCTCCTGCA AGCGAAGATA
GGCCACAAAC TCGGCGGCCC CCGCCGTTTT GGATTCGAGC GGGTGCTCGT CGACGAAGAC
GACCAACCCA TCCAGAAGCT GGAGCGGGGG CAGGCGAAAG CGCTGAACAA TCAGCGTGTC
GTCTACGCGA TCGGTCCGTC GGACGAGGTA AAGGTCATCC GCGACATCTT CACCTGGTAC
ACACGCGACC GGATGAGCAT CCAAAAGATC GCCGAGCGGC TGACGGATTC TGACGCCCCG
ACCGGCGACC ACCCAACCTG GAGCTATTCT CGCGTGCGCC GGATTCTTGC CGACGAGCTG
GTGCTCGGCA TCTATGTCTT CAACCGCACC ACCCAGAGGC TTAAATCCAA ACCGCGGAAG
AACCCGCCCG AGGCCCTGGT CAAGACGAAG GTGACGGAGC CGATCATCAG CCGCGTTCAG
TTTGAGAGCG CGGCGCGACG CCTGCGGATT CGGCGGCATA ACGTTCCGCC GGAGGAGAAT
CTGGCAGCCG TTTCGCGGCT GCTGCGTACA AAGGGCTATC TCACCGGGAA GTTGATCGAT
CAGTGCCTTT ATACCCCGTG CAGCAGCGTC TTGTTGCGGC AGTTCGGCTC GCTTCACCGG
GTATACGAGC TGGTTGGCTA CAAGCCGGAG GGGTGGTGGC ATCCCCGCAA AGGAATCAAA
CCCGCTTCGA AGGACGAACT GCTCACCCGT CTGCGCGCGC TCCACGAGCG CCTAGGCTAT
GTCAACGAGC ATGTGATCAA CAGCGATTCC ACGGTCCCGA GCGTCAGCGT CTTCCAGCGT
CATTTCGGCA AACTCACTGA CGCTTACCGG CTGGCGGGCA TTCCGCATGG CCGGACCGAA
CTCCAGCGGC TTGGCCATGA ACGGCTGAAA GCGAGCCGGG CGGGCGAGCC GCCTCGCAAG
ATTACCACGC CCCGCTGGCC GGAACTCGCG AGCAGATTCA CGGATGAGGA TCTGCTTGCC
TGCCTTCGCC GGCTCCATGA GCAACATGGC TTCGTCACCG CGCGAATCAT CCGGGAGGAT
GAAAATTCAC CGACCCCGAT GCTCTTCACC GCGCGATTTG GTTCGCTCTT GAACGCGTAT
GCATGCGCGG GGATCGAAAA CCGTCGCTTC GACATCTGGA GTCGGGCGGG GAAGGCAAGA
GCGGCGGCAA GAAGAGCCCG GAAATTGGCC ATCGAGCTTC AGCCTCCCGG ACGTAAGTGA
|
|---|
| Protein sequence | MSDNSPQTLV PAAQYLRMSK EHQRYSIRNQ ARAISTYAEQ HGFKITKTYT DPGESGLTLR
ERPGLQALLA DVIKPSRPFE RILVLDVSRW GRFQNLDQSG HYEFICFEAG VPVIYCAEPF
DNDGTPVMAL LKQIKRLQAA EYSRELSSKV LYAQLLQAKI GHKLGGPRRF GFERVLVDED
DQPIQKLERG QAKALNNQRV VYAIGPSDEV KVIRDIFTWY TRDRMSIQKI AERLTDSDAP
TGDHPTWSYS RVRRILADEL VLGIYVFNRT TQRLKSKPRK NPPEALVKTK VTEPIISRVQ
FESAARRLRI RRHNVPPEEN LAAVSRLLRT KGYLTGKLID QCLYTPCSSV LLRQFGSLHR
VYELVGYKPE GWWHPRKGIK PASKDELLTR LRALHERLGY VNEHVINSDS TVPSVSVFQR
HFGKLTDAYR LAGIPHGRTE LQRLGHERLK ASRAGEPPRK ITTPRWPELA SRFTDEDLLA
CLRRLHEQHG FVTARIIRED ENSPTPMLFT ARFGSLLNAY ACAGIENRRF DIWSRAGKAR
AAARRARKLA IELQPPGRK
|
|---|
| |