Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_0176 |
Symbol | |
ID | 5200327 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | - |
Start bp | 166438 |
End bp | 167058 |
Gene Length | 621 bp |
Protein Length | 206 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 640579715 |
Product | ECF subfamily RNA polymerase sigma-24 factor |
Protein accession | YP_001260685 |
Protein GI | 148553103 |
COG category | [K] Transcription |
COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 31 |
Plasmid unclonability p-value | 0.658272 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.578435 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCGCCGG AGATCGCCGA CGGCGCGATT TGGAGCGTGA TCATGGTCCC CTCCCCTAGC CAGCCAGCGC CCTCGGCCGA CGATACGGCC CGTCCACTCT CCAGCGAGAA CGGGCCGACG CCTTCGCTAA TCGGGCTCGC AGAACTTCAT CGCGTCCATT CCGCGCGGCT GCTTCGCTTC TTTGCGCGCC ACGGAGCGCG GCAGGACGCG GCCGATCTCG TTCAGGAAAG TTTTGCCCGG CTGGCAGGGG CACGGGCAAA AAAACCTGAC ATGGCGCTAG AACGACCAGC AGCCTATCTC AGCACGATCG CCTCGAACCT GCTTCGGGAC AGGGCCAGGA TCGCGGCGTG TCGTTCGACG GCCCACCATA TTCCGGTTGA CGAGGTGCCG CTCGCGGGAA ACGATCCCAT CGCCGCACTT GAGGCGCGCG ATCAACTCGA ACGGGTTCAA GCCACGCTCG CCCGATTATC GCCAAAGACC CGATCGGTCT TCCTTGCCCA TCGTCGCGAT GGTATAAGCT ACAAGGATAT CGCCAACCGA GAAGGTTTGA GTGAAAAAGC AGTCCAGCGA CGCATGTCCA AAGCTATCGC ACACATTAAA CGCGCAGGAA GAGTTTACTG A
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Protein sequence | MPPEIADGAI WSVIMVPSPS QPAPSADDTA RPLSSENGPT PSLIGLAELH RVHSARLLRF FARHGARQDA ADLVQESFAR LAGARAKKPD MALERPAAYL STIASNLLRD RARIAACRST AHHIPVDEVP LAGNDPIAAL EARDQLERVQ ATLARLSPKT RSVFLAHRRD GISYKDIANR EGLSEKAVQR RMSKAIAHIK RAGRVY
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