| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_0163 |
|---|
| Symbol | |
|---|
| ID | 5197042 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | + |
|---|
| Start bp | 155454 |
|---|
| End bp | 155720 |
|---|
| Gene Length | 267 bp |
|---|
| Protein Length | 88 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 640579702 |
|---|
| Product | Type IV secretory pathway TrbD component-like protein |
|---|
| Protein accession | YP_001260672 |
|---|
| Protein GI | 148553090 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG5268] Type IV secretory pathway, TrbD component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 37 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.578435 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGCGAGG AGGATCTCCC CGGCTTCGCG GTGCCGGTTC ACCGGGCGCT CGCCGAGCCG
ATCATGCTGG CCGGCGCGCC AAGGGCACTT GCCATCTTCA ACGGCACGCT CGCCGCCGCA
GTCGGGATCG GCCTCAGGCT CTGGATCGCC GGCATCGTCA TCGCGATCGT GGGGCACGGC
CTCGCCGTCT TCGCCGCGCG CCGCGATCCG CAGATCCTCC CGGTTGCCCG TCGCCACATG
GCGCTTCCCA CCCTCTTCGA AAGCTGA
|
|---|
| Protein sequence | MGEEDLPGFA VPVHRALAEP IMLAGAPRAL AIFNGTLAAA VGIGLRLWIA GIVIAIVGHG
LAVFAARRDP QILPVARRHM ALPTLFES
|
|---|
| |