| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_5106 |
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| Symbol | |
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| ID | 5195952 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009508 |
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| Strand | + |
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| Start bp | 216288 |
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| End bp | 217583 |
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| Gene Length | 1296 bp |
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| Protein Length | 431 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640579532 |
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| Product | integrase catalytic subunit |
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| Protein accession | YP_001260480 |
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| Protein GI | 148551050 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG4584] Transposase and inactivated derivatives |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 48 |
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| Plasmid unclonability p-value | 0.214322 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 0.182706 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCCGAC TTGGAGAAGC CATGATGATA CTGGAGTTGC ACCGGCAGGG CTTGTCGGTG
ACGGCGATTG CGCGCCGAAC AGGCCGCGAT CCCAAGACAG TTCGCAAATA CATTGAACGC
GGCGTCGAGG TGCCGGTCTA TGGCCCGCGT GTGACGGGCC GGCCGAGCAA GATCGCGCCC
TACATGGAGT TCCTTCGTGA ACGTGTCGCG GCATTCCCCG ACCTGACGGC CTCGCGACTG
ACCCGTGAGA TCAGGGAGAT GGGCTACATG GGCGCCTACA CGGCAGTGAA GCGCTACCTT
GCTGCGATCC GGCCCGAACA TGATCCCAAG CCCTACGAGG TTCGCTTCGA GACCAAGGCC
GGCGTGCAGG GCCAAGTCGA CTTCGCGCGC TTTGTCGTCG AGTTCGCCGA CGAGCCGGGT
GTCGTGCGGA TCGTCTGGCT GTTCAGCCTG GTGCTGGGCT ACTCGCGCTT CATCTTTGCC
CGCTATGTGC TGCACCAGGA CCTGCAGACG CTGCTGCGCT GCCATATGCA GGCCTTCGAG
GCGCTGGATG GCGTGCCCAT CGAGATCCTC TACGACCGGA TGAAGACCGC GGTCACCGGC
GAGGATGACC AGGGACACAT CGTCTACAAT CGCTCGCTGC TGGCGCTGGC GCAGCATTAT
CGCTTCCAGC CCAGAGCGTG CCGGCCATAT CGCGCCAAAA CGAAGGGCAA GGTCGAGCGC
CCGTTCCGCT ATATCCGCGA GGACTTCTTC CTGGGCCGAT CCTTCCGCAA CATGGAGGAC
CTCAACGCCC AGCTCATCGA CTGGCTCGAC ACCGTCGCCA ACGTACGCGT GCACGGGACG
ACCCAACGGG TGGTGGCCGA GGCCTTCGCC GAGGAGCAGG AAGAGCTGCA GCGGCTGCCA
GAGCATCGCT TCAACGCCGT CCTGAAGCTC GAGCGGCGGG TCAGCCATGA CGGGCTCGTG
GCGGTCGGCG GCAACTATTA CAGCGTACCC GACAGGACGC GCCGGATCGT TGAGATAGAG
CAGTTGCCGG ACCTGGTCCG CATCATCGAC CGCGGCATCG TCGTTGCCGA GCACCCCGTG
CTCGAGGGAC GCCGGCAATA TCGCATCGAC CGGCGCCACC GCACCGGGCG GCCGCAACCG
CGAACACCGG ATCGGCCCAT GACGATGCTC GGCCGGATCG GCGACCATGT GCCGTTGCGC
TCGCTGACCG TCTACGAGGC GATCGGCGCG AGCCTGGCGA AGCCTGTCCT GAGCGCCTGC
CGCAGGCCGG CAGTCGAAGG GGAGGGGCGG CCATGA
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| Protein sequence | MIRLGEAMMI LELHRQGLSV TAIARRTGRD PKTVRKYIER GVEVPVYGPR VTGRPSKIAP
YMEFLRERVA AFPDLTASRL TREIREMGYM GAYTAVKRYL AAIRPEHDPK PYEVRFETKA
GVQGQVDFAR FVVEFADEPG VVRIVWLFSL VLGYSRFIFA RYVLHQDLQT LLRCHMQAFE
ALDGVPIEIL YDRMKTAVTG EDDQGHIVYN RSLLALAQHY RFQPRACRPY RAKTKGKVER
PFRYIREDFF LGRSFRNMED LNAQLIDWLD TVANVRVHGT TQRVVAEAFA EEQEELQRLP
EHRFNAVLKL ERRVSHDGLV AVGGNYYSVP DRTRRIVEIE QLPDLVRIID RGIVVAEHPV
LEGRRQYRID RRHRTGRPQP RTPDRPMTML GRIGDHVPLR SLTVYEAIGA SLAKPVLSAC
RRPAVEGEGR P
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