| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_5041 |
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| Symbol | |
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| ID | 5195898 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009508 |
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| Strand | - |
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| Start bp | 153304 |
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| End bp | 154194 |
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| Gene Length | 891 bp |
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| Protein Length | 296 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640579473 |
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| Product | intradiol ring-cleavage dioxygenase |
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| Protein accession | YP_001260421 |
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| Protein GI | 148550991 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG3485] Protocatechuate 3,4-dioxygenase beta subunit |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 52 |
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| Plasmid unclonability p-value | 0.193413 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 42 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCAAGG ACATGGACGA TGTCACGCCT GTGGTGCTGG CGGTGATGGA GCGTACGTCC
GACCCCCGGC TGCGCAAGAT CATGGTCTCG CTGATCCGCC ATCTGCATGG CTTCATACGT
GACGTAAGTC TGACGGAGGC GGAATTTCGC GCCGCCACCG CGATCATCAA CGACATCGGC
CAATGCTCCA ACGATTCCCA TAATGAGGCC GTGCTCATGT CGGGGTCGCT CGGCGTGTCC
AGTCTCATAT GCCTCATGAA CAACGGCGAT TCCGGCCAGA CGGAGACGTC GCAGAACCTG
CTCGGGCCGT TCTGGCGGAT ACATTCTCCC AGGATGGAAA ATGGCGGCTC CATCGTGCGC
TCCGATACGC CGGGCGATCC CCTGATCGTG CGGGGGCGCG TGCTCGACCG GCGGGGAAAT
CCGGTGGTCG GGGCCGAAGT CGATATCTGG CACGCTTCGC CCGTCGGCCT GTATGAAAAT
CAGGACGACG GTCAGGCGGA ATGGAACCTG CGCGGCAAGT TCACCACCGA CGAGGATGGC
CGCTTCTGGC TGCGCACCGT GAAGATGGTG GGATATCCGG TCCCGACCGA CGGCGTTGTG
GGCAGGCTGC TGGCGGCCCA GGGGCGTCAC CCATATCGTC CCGCCCATCT GCACGCGCTG
ATCGTGAAGC AGGGCTTCAA GGTGCTGATC AGCCAGGTCT ATGACCCGAC CGACCCCCAC
ATCGACAGCG ACGTTCAGTT CGGCGTCACG CAGGTTTTGA TCGGCAATTA TGTGCGGCAC
GACGAGCCGT ATGACGGCGA CCCCACGCTG GCCACGCCAT GGTACGCGCT CGACTACACT
TATGTCATGG AAGAGGGCGA GACGATGCTG CCGCGCCCGC CGATCAAGTA G
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| Protein sequence | MIKDMDDVTP VVLAVMERTS DPRLRKIMVS LIRHLHGFIR DVSLTEAEFR AATAIINDIG
QCSNDSHNEA VLMSGSLGVS SLICLMNNGD SGQTETSQNL LGPFWRIHSP RMENGGSIVR
SDTPGDPLIV RGRVLDRRGN PVVGAEVDIW HASPVGLYEN QDDGQAEWNL RGKFTTDEDG
RFWLRTVKMV GYPVPTDGVV GRLLAAQGRH PYRPAHLHAL IVKQGFKVLI SQVYDPTDPH
IDSDVQFGVT QVLIGNYVRH DEPYDGDPTL ATPWYALDYT YVMEEGETML PRPPIK
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