| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_5007 |
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| Symbol | |
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| ID | 5195963 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009508 |
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| Strand | - |
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| Start bp | 124328 |
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| End bp | 126745 |
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| Gene Length | 2418 bp |
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| Protein Length | 805 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640579442 |
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| Product | type IV secretion/conjugal transfer ATPase |
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| Protein accession | YP_001260390 |
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| Protein GI | 148550960 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
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| TIGRFAM ID | [TIGR00929] type IV secretion/conjugal transfer ATPase, VirB4 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 0.0207382 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 0.0996879 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTAGCC GGGCCAACTC GTTGGGCGGC GCTGCCGCCC GGACGCCGTG GCGGATCCTC
AAAAACGAGG CGGACCCCGC GCGTTATCTC CCCTATGCGC GTCACATCGA CGACAATGTC
ATCGCGCTCG ACGGGCGCGA CCTCATGATG ATGTTCAAGC TCGATGGCCT CGCATTCGAG
ACCGCCGACC CAATCCATCT CAACGACTGG CACGAAAAGC TCAACGGCAC GCTGCGCAAT
ATCGCCGACG ACCGCCTGGC GATCTGGACC CATATCGTTC GTCGGCCAAT CACGGACTAT
CCCGAAGGCG AGTTTCGCTC GGCCTTTGCG GCCGATCTCG ATGCAAAATA CCGCGCGCGG
GTGACCGCCA AGCGCATGTT CGTCAACGAG CTCTACCTGA CGCTCATCAT GCGTCCATCC
GTAGGATCGG CCGATCGTAC CGGCGAGCTG CTTCGACGTC TGGCGTCGGC ACGCAAGGAG
GGGACCGAAG TCGACGAGGA CGAGCTTGCG CGCTTTGAGG ATAAAGCGCG TGACATCGAG
AAGCTCCTCG CACGCTGCCG GCCCCAACGC CTCCACTTGT ACGAGCATAA TGGCCTGATG
TTCTCGCAGC CGCTCGAGGT GCTTGAACTG GTGATGATGG GCCGTGCTGG CAGGGTGCCC
CTGGTCCGAG GCCATCTCGG CTCCGCCATC TATGGGGAAC GGGTGATCTT CGGCCGGGAG
ACGGTCGAGG TGCGGGCGCA TGACACAAGC CGGTTCGTCG GCCTTTTCGG CATTCGCGAA
TATCCGGCCA TGACGCGGCC AGGGCAGATG AACGCGCTCC TCAGCCAGGA TTTCGCGTTC
GTCGTGACGC AGTCTTTCGC GTTCATGGGC AAAGCGCGGG CCTCGGAGCG GTTGCGTCGG
CGTCAGAACC AGATGGCTTC GACGGAGGAT GCCGCTGCGA GCCAGGCGCT TGAGCTTGCC
GACGCGGCCG ACGATCTGCA GAGCAATCGC TTTGTCCTGG GCGAGCATCA TTTCTCGCTC
GCGGTCTTCG GTGAAAATCA GAAGCGACTG GCCGAAAATC TCTCGACCGC TCGGGCGGCG
CTCGCCGACG CGGGTCTGGT AGCCGCTCGG GAGGGTCCGG CGCTGGAGGC GGCCTTCTGG
TCGCAGCTTC CTGGCAACTT CGCATGGCGT GCGCGGCCAG CGGCGATCAC GTCACGCAAT
TTTGCCGCGC TCTCGCCGTT CCACACTTTC CCCGCCGGCA AGCCCGATGG CAATCACTGG
GGTGCTGCGA TCGCGTTGAT GAAGACCGCA GCCCAGTCTC CCTTCTATTT CAACTTCCAT
GTCAACGACC TTGGCCACAC GCTGATCATT GGCCCGTCGG GCGGCGGCAA AACCGTCGTC
CAGAATTTCC TGATGGCGCA GCTGGAGAAA ACCGGCGCGC AGCAGATCTT CATCGACAAG
GATCGAGGGG CCGAGATCTA TGTGCGGTCA TCCGGCGGCA CCTATCTTGC GCTGCGCAAT
GGGGTGCCGA CCGGGTTTGC GCCGCTGCGC GCGCTTGAGC AGACCCCGGG CAACATCGTC
TTCCTCGGCA GGCTGATCCG CCATCTGGTG ACCCCATCGG GCACCCAGCT CGGCGTCACG
CAGGAGCGGA TGATAGACGA GGGCATCCTC TCGATCGGAC GCCTTCCCCC GGAGGAGCGG
TCCATCCTCG CGCTTCGCCA ATTGCTCGGA CAGCGCGATC CGGAAGGGAT AGGCGCGAGG
CTTGAGAAAT GGTCGCGCGG CGGCGCACTC GGCTGGGTGT TTGACAATGA CAGGGACGAG
CTGACCCTCG AGGCCAGGTT CATCGGTTTC GACATGACGG ATTTCCTCGA CAATCCCGAG
ATCCGCACGC CGCTGATGAT GTATATGTTC CACCGGATTG ATGCCCTGCT CGATGGCCGT
CGCCTCGTGA TCGACATCGA CGAGTTCTGG AAGGCGCTGG GCGATGATGC GTTCCGCGCC
TTCGCGCAGG ACGGCCTGAA GACCTACCGG AAGCAGAATG CCTTTCTGGT GTTCGGGACG
CAAAGCCCGG CTGACGCTCT GCGATCGGAC ATCTCGCACA GCATAATGGA GCAGGTCGCC
ACCAAGATCC TCTTGCCCAA CCCCCATGGC CGAGAGGTCG ATTATATCGA CGGGCTCGGC
CTCACCCGCG CCGAGTTCAA GCTCATCAGA AACGATCTGA TCCCCGAAAG TCGGCGATTT
CTGGTCAAAC AGGGTCACGA TTCCATCGTG GTGGAACTCG ATCTCGGCGG CCTGTCCGAC
GAGTTGGCCG TTCTTTCGGG CACCACCGAA ACCGTCGGAA TCCTCGATCA GGTTCGCCGC
GACCAAGGCG ACGATCCCAG CCAATGGCTG CCCGTCTTCC ACGAGCGCCG CCGTGCCACC
ACCAAAAGGA AAGGATAA
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| Protein sequence | MASRANSLGG AAARTPWRIL KNEADPARYL PYARHIDDNV IALDGRDLMM MFKLDGLAFE
TADPIHLNDW HEKLNGTLRN IADDRLAIWT HIVRRPITDY PEGEFRSAFA ADLDAKYRAR
VTAKRMFVNE LYLTLIMRPS VGSADRTGEL LRRLASARKE GTEVDEDELA RFEDKARDIE
KLLARCRPQR LHLYEHNGLM FSQPLEVLEL VMMGRAGRVP LVRGHLGSAI YGERVIFGRE
TVEVRAHDTS RFVGLFGIRE YPAMTRPGQM NALLSQDFAF VVTQSFAFMG KARASERLRR
RQNQMASTED AAASQALELA DAADDLQSNR FVLGEHHFSL AVFGENQKRL AENLSTARAA
LADAGLVAAR EGPALEAAFW SQLPGNFAWR ARPAAITSRN FAALSPFHTF PAGKPDGNHW
GAAIALMKTA AQSPFYFNFH VNDLGHTLII GPSGGGKTVV QNFLMAQLEK TGAQQIFIDK
DRGAEIYVRS SGGTYLALRN GVPTGFAPLR ALEQTPGNIV FLGRLIRHLV TPSGTQLGVT
QERMIDEGIL SIGRLPPEER SILALRQLLG QRDPEGIGAR LEKWSRGGAL GWVFDNDRDE
LTLEARFIGF DMTDFLDNPE IRTPLMMYMF HRIDALLDGR RLVIDIDEFW KALGDDAFRA
FAQDGLKTYR KQNAFLVFGT QSPADALRSD ISHSIMEQVA TKILLPNPHG REVDYIDGLG
LTRAEFKLIR NDLIPESRRF LVKQGHDSIV VELDLGGLSD ELAVLSGTTE TVGILDQVRR
DQGDDPSQWL PVFHERRRAT TKRKG
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