| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_4908 |
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| Symbol | |
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| ID | 5196028 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009508 |
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| Strand | - |
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| Start bp | 21498 |
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| End bp | 22349 |
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| Gene Length | 852 bp |
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| Protein Length | 283 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640579348 |
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| Product | integrase catalytic subunit |
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| Protein accession | YP_001260296 |
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| Protein GI | 148550866 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG2801] Transposase and inactivated derivatives |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 84 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 0.168017 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGCCGG TGTCCGAGCG GCGGCTGTGC CGTGTGCTCG GGCAATACCG ATCGACACAG
CGCAAAGCGC CTCGCGGGGC AGATGACGAA GCGGCTCTCA CCGAGGATAT CATTGCGCTG
GCGCGGCAAT ATGGTCGTTA TGGCTATCGC CGGGTGACGG CGTTGCTGCG CGATGCGGGG
TGGCATGTGA ACCGCAAGCG GGTCGAGCGC ATCTGGCGAC GCGAGGGGCT CAAGGTGCCG
CAAAGGCAGC CGAAGCGCGG GCGGCTGTGG CTGAACGACG GATCGTGCAT CCGGCTTCGG
CCCGAGTATC CTGGCCATGT CTGGTCCTAC GACTTTGTTG AGGGGCGGAC GCACGATGGG
CGTAAATACC GTATCCTGTC GATCATCGAC GAGGCGAGCC GGGAGTGCAT GGCGTTGCCC
GTGGCGCGCA AGCTTAAGAG CGACGATGTG CTGGCGGCGC TGGCCGAACT GTTCGTCACG
CGCGGGCCAC CAGCGCATAT CAGATCCGAC AATGGCCCGG AGTTTATCGC TACGGCGGTA
CAAGAATGGC TGGCCAAGGT CGGCGTGAAG ACGCTCTGCA TTGCGCCCGG ATCGCCATGG
GAAAATGGCT ATTGTGAATC GTTCAACGGG TCGCTGCGCG ATGAACTGCT CAACGGCGAG
ATCTTCTACT CGCTAGCCGA GGCCCGGATC CTGATCGAAG CGTGGCGGCG ACATTACAAC
ACCGTCCGGC CGCATAGCTC GCTCGGGTAT CGACCGCCCG CGCCGGAGGC CGTTCCATCT
CCAGTGTCGC CCTCCGGTTC CGCTTCGCTC CACCTACGGC CAACACTGGA GATGGAGGCG
TCAATGCACT AA
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| Protein sequence | MMPVSERRLC RVLGQYRSTQ RKAPRGADDE AALTEDIIAL ARQYGRYGYR RVTALLRDAG
WHVNRKRVER IWRREGLKVP QRQPKRGRLW LNDGSCIRLR PEYPGHVWSY DFVEGRTHDG
RKYRILSIID EASRECMALP VARKLKSDDV LAALAELFVT RGPPAHIRSD NGPEFIATAV
QEWLAKVGVK TLCIAPGSPW ENGYCESFNG SLRDELLNGE IFYSLAEARI LIEAWRRHYN
TVRPHSSLGY RPPAPEAVPS PVSPSGSASL HLRPTLEMEA SMH
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