| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_5374 |
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| Symbol | |
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| ID | 5195587 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009507 |
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| Strand | + |
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| Start bp | 281013 |
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| End bp | 281576 |
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| Gene Length | 564 bp |
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| Protein Length | 187 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640579301 |
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| Product | type IV secretory pathway protease TraF-like protein |
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| Protein accession | YP_001260249 |
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| Protein GI | 148550810 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4959] Type IV secretory pathway, protease TraF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 45 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 0.705949 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGGCCC TGCTCAGTGA CAGGGGCGAA ACCCCGGTGG TGCCGGCTCG CGCAGCGCCG
GCCTGGCGAC CGCGCAAGCA TCTCTGGGCG GCGCTGGGGC TCCTGTCGGT CGGCACCGTG
GTTCTGGGCG CGATCGCGGA TTGGCGCGAT CGTCATGCCT TCCTCATCAA CACGAGCGAG
TCCCTGCCGA ACTGGGCGTT CCTCATCGAT CGGGGCCGAA TGCCGGCCCG CGGTGACTAT
GTCTTCTTCG ACCCGCCCGC GACCGCTCTC GTCCACCGTC ATTTCGGAGC GCGGCCCGCT
ATGTTCGGCA AGCTGGTTTA TGGTCTGCCC GGCGATGTTG TTTCCCATAG CGGCAACGAC
GTCCTGATCG AAGGGCGCCT GGTGGCGCGC ATGAAGCGAG CCTCGCGCCT GGGCGAATTG
TTGACGCCCG GCGCGACCGG GCCGGTCCCG GCGGGCTGCT ATTTTGTCGG GACGCCGCAC
AAGGACGGGT TCGACAGCCG CTATGCTGAC ATCGGCTTCG TCTGCGCGCG CCGGATTATC
GGTACCGGGA AGCCGCTACT ATGA
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| Protein sequence | MSALLSDRGE TPVVPARAAP AWRPRKHLWA ALGLLSVGTV VLGAIADWRD RHAFLINTSE
SLPNWAFLID RGRMPARGDY VFFDPPATAL VHRHFGARPA MFGKLVYGLP GDVVSHSGND
VLIEGRLVAR MKRASRLGEL LTPGATGPVP AGCYFVGTPH KDGFDSRYAD IGFVCARRII
GTGKPLL
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