| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_5371 |
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| Symbol | |
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| ID | 5195829 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009507 |
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| Strand | + |
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| Start bp | 277418 |
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| End bp | 280012 |
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| Gene Length | 2595 bp |
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| Protein Length | 864 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640579298 |
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| Product | Type-IV secretion system protein TraC |
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| Protein accession | YP_001260246 |
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| Protein GI | 148550807 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
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| TIGRFAM ID | [TIGR00929] type IV secretion/conjugal transfer ATPase, VirB4 family
[TIGR02746] type-IV secretion system protein TraC |
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Plasmid Coverage information |
| Num covering plasmid clones | 33 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.622531 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGAAAG GCGGCTTTTT CGACAGCATG CTTTCGGGGC TCTTCGGCGA TGCCGCGCGC
CCTGATGATG ACCGGCCCGC GCTTGGCGTT CCCATGCTGG CGCACTGGCT GCCCTATCGC
AGCTACGATC CCAAGACGGG GATCTTCTAC AACAGCGCCT CGCGCGGATT CGTGATCGAG
GCCGCTCCGA TGGTGGGCGC GGACGAGCGC ACCGCGGAGA TCATCACGCA GTTCCTGTCC
GAAGGCATTC CCGCGCCGGG CTGCATCCAG TTCCATCAGT GGATGAGCCC GCGCGTGGGG
GAGGCGCTGA GCAAATGGTA TCTGCCGCGC TATGCCGCAC GCGGCGTCTA CGAACGGATG
GCCAAGCACC GGGTCGATTT CCTCAGCGAC GGCGTATGGC AGTCGCTCTC GAAGGACGCG
CCCTTTTGCC TGCGCCATCA CCGCGTGGCG ATCTCCTATT CGACGCCCGA GAGCTCGTCG
GTGTCCGATG ACGACATCGT CTCGGTCATG GAGGGGCTCG TCTCCGCGCT GGCTTCGGTG
GGGATCACGA CCCGGCGCAT GGATCCGGTC GCGCTGATCG CCTGGATCGA CGACATCACT
TCACCGACCA CGGCTGCCGG TGAGGACGTC GTCAGCTACA ATCCCTTCGA TCCAATCGCC
GACCAGGCCA TTCGCCGCGA CATCGAGCTC CGGGTCGAAC CCGACCGGAT GCTGCTGCGC
ACCGAGCGGT TCCGACCGAC CGGCAAGGTC CACGAAGGCG CCCCGGAGAT CGGCGAGATC
TATCCCGATG TCTTTGACGT GCGCTCCTTC TCGGTGCGCA ACCTGCCCAA TCGCTGGGCG
CCCTGGGACA TGGCGAAGCT GGTGGGCGAC ATGTTCACTG ACAAGCTGCG CATGCCGTGC
CCGGTCGCGA CGAACCTGTG CGTTGAATAT CCGGACACCC AGGCCTCGTC GAACAAGGCG
AGCTTCAAGT TCATGCGGAC GACGAGTCTC GCCGATTCCA AGTCCGCGCG TTTCCTGCCG
CAGCTGCGCG ACCAGAGCCA GGAGTGGCGG TTCGTCAACG ACGAGATCCG GCAGGGCCGC
AAACTTGTGC GGGTATTCTT TTCCGTCACC TCCTTCTCGC CCAAGGGACG CGGCGACGCC
AACGAACGTG TGCTCAAATC CGTCTACCGC GCGGCGGGCT GGGACCTGCT CGACGACCGC
TACCTGCAGG TGATGGGCCT GCTCTGCGCC ATGCCCATGA CGATGGCCAA CGGCCTGTCG
CGCGATCTCG AGCGGATGAA GCGCATGCGC ACGCTGCTCA CCACCACCGC CGCCAATCTC
GCGCCGCTGC AGGGCGAATA TCTAGGCGGC CATGTGCCGC ATCTCCTGAT GGTGGGACGG
CGCGGCCAGC CCTTCTTCTG GTCACCCTTC GAAAACGCGG CGGGCAACCA TAATGTCGCG
GTCTTCGGCA AATCGGGATC GGGCAAGTCG GTGGCCTTGC AGGAGCTGTG CGCCTCGCTG
TGCGGCGCTG GCGCAAAGGT GGTCGTGATC GACGACGGGC GATCGTTCGA GCATTCGGCC
AAATTGCAGG GCGGCGCCTT CGTCGAATTC ACCATGAGCT CGGGCTTCTG CCTTAATCCC
TTCTCGATGA TCGACGAGGC CCAGGCGGCT GAGGACGAGG ACTATCTGCT CGACTGCATG
GCGATGCTCA AGGCCATCGT GAACCAGATG TCGCGCCACA TCGACCGTCT CAACGATACC
GAGCGCGGCC TCATCGATGG CGCGGTCAAC ACGGTGTGGG AGGCACACGG CCGAAGAGGA
TCGATCGACC TTGTGATCGA GGCGCTCGAT GCAACCGGCA ACGCGCTCGC GCACGACCTC
GGTATTGCGA TGCGCCCCTT CTCGGCGGCG GGCACCTATG GCCGGTTCTT CCAGGGGGAG
GTCAGCTTCG AACTGAAGGC GCAGCTCACG GTCTTCGAGC TCTCGGATCT CTCCGCGCGC
GAAGAACTGC GCAGCGTGGT CCTCACCGCC ATCATGTTCA TGTCGCAGCA GGTGATGCGC
AAGGTCGATC GCGCAATCCC CAAGGCACTG CTGCTGGATG AAGCCTGGCA GCTGCTGCGC
GGCGGGGCTA TGGCCGACTT CATCGAGACC TATGCGCGCA CCTGCCGCAA ATATGGCGCT
TCGCTCGTCA CCGCCACGCA GTCGCTCAAC GATTATTACA AGTCGGCGGG TTCGATCGCG
GCGCTGGAGA ACAGCGACTG GTTCGTCATC CTGCAGCAGA AGCCGGAAAC GATCGCCGAC
TTCAAGAAGC ATGATCGCTT CGAGATGGAC GATTATACCG ATGCGCTGCT GCGCTCCTTG
AAGCGTAACG GCTTCGAATA TTCGGACATC ATGATCAAGG GACCCGAGAC GCTGGCGGTT
GGTCGCCTGG TTCTGGATCC CTATTCAGCC ACATTGTTTT CCTCGAGCCC GCAGACCTTC
GCCCGGATCG AGGCGCTGAT CGGAGAGGGT CTCAGCATGG ACGAGGCGAT CGAGCGCATC
GCCTTTCCCG ACAACCCCGA GAAATGGGCG GCGAACGCGG AGAGTGATCC CGACGTCGCA
ATCGCCGCGG AGTAG
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| Protein sequence | MAKGGFFDSM LSGLFGDAAR PDDDRPALGV PMLAHWLPYR SYDPKTGIFY NSASRGFVIE
AAPMVGADER TAEIITQFLS EGIPAPGCIQ FHQWMSPRVG EALSKWYLPR YAARGVYERM
AKHRVDFLSD GVWQSLSKDA PFCLRHHRVA ISYSTPESSS VSDDDIVSVM EGLVSALASV
GITTRRMDPV ALIAWIDDIT SPTTAAGEDV VSYNPFDPIA DQAIRRDIEL RVEPDRMLLR
TERFRPTGKV HEGAPEIGEI YPDVFDVRSF SVRNLPNRWA PWDMAKLVGD MFTDKLRMPC
PVATNLCVEY PDTQASSNKA SFKFMRTTSL ADSKSARFLP QLRDQSQEWR FVNDEIRQGR
KLVRVFFSVT SFSPKGRGDA NERVLKSVYR AAGWDLLDDR YLQVMGLLCA MPMTMANGLS
RDLERMKRMR TLLTTTAANL APLQGEYLGG HVPHLLMVGR RGQPFFWSPF ENAAGNHNVA
VFGKSGSGKS VALQELCASL CGAGAKVVVI DDGRSFEHSA KLQGGAFVEF TMSSGFCLNP
FSMIDEAQAA EDEDYLLDCM AMLKAIVNQM SRHIDRLNDT ERGLIDGAVN TVWEAHGRRG
SIDLVIEALD ATGNALAHDL GIAMRPFSAA GTYGRFFQGE VSFELKAQLT VFELSDLSAR
EELRSVVLTA IMFMSQQVMR KVDRAIPKAL LLDEAWQLLR GGAMADFIET YARTCRKYGA
SLVTATQSLN DYYKSAGSIA ALENSDWFVI LQQKPETIAD FKKHDRFEMD DYTDALLRSL
KRNGFEYSDI MIKGPETLAV GRLVLDPYSA TLFSSSPQTF ARIEALIGEG LSMDEAIERI
AFPDNPEKWA ANAESDPDVA IAAE
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