Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_5304 |
Symbol | |
ID | 5195771 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009507 |
Strand | + |
Start bp | 202186 |
End bp | 203334 |
Gene Length | 1149 bp |
Protein Length | 382 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 640579231 |
Product | transcriptional regulator, CadC |
Protein accession | YP_001260179 |
Protein GI | 148550740 |
COG category | [K] Transcription |
COG ID | [COG3710] DNA-binding winged-HTH domains |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 43 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGCCGCCGC GTGGATATCA TTTCGGCCAG TTCGTCCTCG ATCCCGAGGA TCGGCGCCTG CTGCGTGACG GCGTTCCGGT CGAGCTCAAC GCGCGCTATC TCGACGCGCT GGCGCTTCTC GTGCGCAATG CCGGGTCGCT CGTCGGCAAG GACCGTTTTC TAAGTGAAGT CTGGAAAGAT GTGCCTGTCA CCGACGAGGC GCTGACCCAG TGCATCCGGC TCCTTCGCCA GCGTCTGGGT GACGATGCGA GCCGTCCGCA TTTCATCGAA ACGGTACCCA AGCATGGCTA CCGCTTCATT GCCGAGGTCG ACTGGCGCGA AAGCTCTGCC CCGGCCGAAG ACGCGGCCCC CCACACGCTT CCCCCGTCGG CCGCGCCCTC GGCGCTCCGC CGCGTAGCGA TGATGGCGGG AGCCGGGACC CTGGGTGCTG GGGGCGCCGG ATTGATCGGC GGGCTCGCAT ACGGCTTTAT CGCCGCGACG CCGCCGCTCC CGAGCGGAGG CGGCGCCGCG TCCTCCGTCT TCGTGTTGCT CTGGCTCACC CTGGCGGTGG CGCTCGTGGG CGGCGCGGGC GTCAGCCTGG GGATTGCCAT AGCCGAGGCC GCAGGCAAAC GCCCATGGCT CACTCCTGGC GGCGCAGTCG GCGGAATGAT CGTCGGCGCC GTCGTGAAGT TGCTCGGGAT CGACGCGTTC AATCTCCTGT TCGGCCAGTC ACCGACAGGG ATTACGGGCG GGCTCGAAGG GCTTTTCCTG GGGGCCGGCG TGGGCCTTGG CGCGACCCTG TCCGGCATGG GCGGCTCGGA TCGTTCCCTT CGCTCTGTGG CAGCGCGGGC GGCGCTTTGC GGCGGTGCGG CCGGGAGCGT TGTCGTTCTT CTTGGCGGCC ACCTGCTGGC GGGGAGCTTC GAGCAACTCG TCCAGACATT CCCGCAATCG CGGATCGGCC TTGCGCAGAT CGGCGGCCTG TTCGGCGAGC AGGGTCTTGG ACCGGTGGCC GAGGCGGCCT GCGCGTTCGG CGAAGGGGCG CTGTTCGCGG CGGGCGTGGT CGTTGCCATG ACGCTCGCGC GCCGTGAGAT GGACAGGCCT GAAGGCCGCT CGGCGGCGTC GTCCGGCCTG GTTGCGAGTC GCAGAGGCGG CGCGCCTCGG TTGGGCTAG
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Protein sequence | MPPRGYHFGQ FVLDPEDRRL LRDGVPVELN ARYLDALALL VRNAGSLVGK DRFLSEVWKD VPVTDEALTQ CIRLLRQRLG DDASRPHFIE TVPKHGYRFI AEVDWRESSA PAEDAAPHTL PPSAAPSALR RVAMMAGAGT LGAGGAGLIG GLAYGFIAAT PPLPSGGGAA SSVFVLLWLT LAVALVGGAG VSLGIAIAEA AGKRPWLTPG GAVGGMIVGA VVKLLGIDAF NLLFGQSPTG ITGGLEGLFL GAGVGLGATL SGMGGSDRSL RSVAARAALC GGAAGSVVVL LGGHLLAGSF EQLVQTFPQS RIGLAQIGGL FGEQGLGPVA EAACAFGEGA LFAAGVVVAM TLARREMDRP EGRSAASSGL VASRRGGAPR LG
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