Gene Swit_5266 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwit_5266 
Symbol 
ID5195794 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingomonas wittichii RW1 
KingdomBacteria 
Replicon accessionNC_009507 
Strand
Start bp160490 
End bp162709 
Gene Length2220 bp 
Protein Length739 aa 
Translation table11 
GC content68% 
IMG OID640579193 
Producthypothetical protein 
Protein accessionYP_001260141 
Protein GI148550702 
COG category[S] Function unknown 
COG ID[COG0392] Predicted integral membrane protein
[COG2898] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones34 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGATCGGAA AAGCGCAAAT GGACCGGCTC AAGAGCGGCG TCCCGGTGGC GGTGGTTCTC 
CTCCTTGCGG CGATGGGCTT CTTCGCACTG TCGCACCTCC TGCGCGAAGT GCACATGCAC
GACATCCGGG CAGCTTGGGC GCAAGTGGGC GTCCTTCATC TGCTCGCGGC GGCGGGACTT
ACCGCAATCA GCTATCTGGC GTTGACGCTC TACGACGTGC TGGCGCTGCG CGCGATCGAT
CGTCCCCTGC CCTATCGCGT CGCGGCGCTG GCCTCGTTCA CAAGCTATAC GCTCAGCCAT
AATCTGGGTC TGGCGCTCTT CACCGGCGGC TCGGCCCGCT ACCGGATCTA TAGCGCGCAC
GGCCTGGGCG CGGGCGATGT GGGCCGCGTG GTCGCGATCG CCGGGCTGAC CTTCTGGGGC
GGCGTCTTCA CCCTTGCCGG GGCGATGCTG GCGCTCTTTC CCGGCGGCCT TGGCTTTGCC
GGCTTCGCGC CCTCGCCCTG GGTCTGGCGA GCAAGTGGCC TCGCGCTCCT TGCCCTCATC
ATCGGTGCGC TTGCCTGGTC AGGACCCTCG GGCCGGACTG TCCGGATCTG GAAATGGGAT
TTGCGGATCC CGGGCTACCG GACGGCGCTC GCCCAGCTTG GCGTCGCCAC GGTCGATCTC
ATGGCCGCGA GCGCGGCCCT GCTGGTGCTG GTCCCGGGCG CTAGTCTTGC CGACTGGCCG
GTCTTCTTCA TCGGCTACAT ATTGGCGATC ATTGCGGTAC TCGTAACCCA CGTGCCGGGC
GGCCTCGGCG TTTTCGAAGC GGTCATCGTG GCAGCCCTGC CGGCAACGCC GCGCCCGGAG
CTCATCGCCG CGCTGCTCGG CTACCGGCTG GTCTACTATA TCCTGCCCCT GCTGATCGCA
GGGGTCATCA TCGCCGTGCA GGAAGGCGCG CGCTGGCGGC GGCCGATGGC TGCGACGTTG
CACGGCGCCC AGACGATCGC CTCGGGCATA GCGCCGACGC TGGTCGCGGC CCTTGTCTTC
CTGGGCGGCA TGGTCCTGCT GGTCTCGGGC GCGCTGCCCG CCGAGCATGA TCGCATGGCG
GCGCTGGCAG CGATCCTGCC CTTGCCGCTG GTGGAAATAT CGCATCTCGC CGGCAGCGTC
GTCGGCGCCG CGCTGCTCCT GGTGTCGGCG GGCCTTTATC GTCGCCTCGA TGGGGCGGCC
TGGCTGACAG GCCTGCTGCT GCTCATCGGC GCGCTGGTCT CGCTCGCCAA GGGCCTCGAC
TATGAGGAGG CGATCCTCAT GCTGCTGCTC GCGGGCGTCC TGCGCTGGAC GCGGGGCGCC
TTCTACCGCC GGACGCGGCT GACGCAGGAA GTGCTGACGC CGAGCTGGCT CGCGAGCGTG
GCGCTGATGA TCGGCCTGCC GATCTGGGTC GGCTTCTTCG CCTATAAGCG CGTGCCCTAC
AGCACCGATC TCTTCTGGCG CTTTTCGGAG CATGGCGACG CCTCGCGCTT CCTGCGCGCC
AGCCTCGGCG TGGGCCTCGC GCTGGCCGCC CTCGCAGTCT GGCGGCTGCT GCGCCCGGCC
CCCGTGGCGG GTCCGGGGCT CGTCAGCCTG GAGCCGCCGC AGGGCGAAGC GATGGCGCTC
ACGCACCGCA CCGATGCCAA TCTCGCCTAT ACGGGCGACA AGCGGTTCCT GTGCTCGCCT
TCGGGCCGCG CCTTTGTCAT GTACCAGGTG CGCGGGGCAA GCTGGATCGT GATGGGCGAT
CCGGTCGGGG ATCCCGCCGA ATGGAGCGAA CTCCTCTGGC AGCTGCGCGA AGGGGCGGAC
GCGGCGCAGG GCCGCTTGCT ACTCTACCAG ATCAGCCTGC AGGCCTTGCC CGTGGCGATC
GACCTGGGCT TGCAGATCGT CAAATATGGC GAAGAAGCGC GGGTCGATCT TGCCGCCTTC
ACGCTCGACA CGCCGTCGGC CAAGCCGCTG CGCTATGCGG TGCGCCGCGC GGAGAAGGAA
GGCGCGCGCT TCGCGATCAT CGCGCGAGAC GAGCTTGCCG CGCATCTGCC GCGGCTGCAG
GAGATTTCCG AAAGCTGGCT GCGCGAGAAG GGCCACCGGG AAAAGGGGTT CAGCGTTGGC
CGCTTCGACC CGCCTATCTC GCCCGCTTCG ACTGCGCGGT CGTCCTGCGC GAGGAGAAGA
TTGTCGCCTT CGCCAATATC TGGGCGACGC AGGATCGCTC CGAGCTGTCG ATCGACCTGA
 
Protein sequence
MIGKAQMDRL KSGVPVAVVL LLAAMGFFAL SHLLREVHMH DIRAAWAQVG VLHLLAAAGL 
TAISYLALTL YDVLALRAID RPLPYRVAAL ASFTSYTLSH NLGLALFTGG SARYRIYSAH
GLGAGDVGRV VAIAGLTFWG GVFTLAGAML ALFPGGLGFA GFAPSPWVWR ASGLALLALI
IGALAWSGPS GRTVRIWKWD LRIPGYRTAL AQLGVATVDL MAASAALLVL VPGASLADWP
VFFIGYILAI IAVLVTHVPG GLGVFEAVIV AALPATPRPE LIAALLGYRL VYYILPLLIA
GVIIAVQEGA RWRRPMAATL HGAQTIASGI APTLVAALVF LGGMVLLVSG ALPAEHDRMA
ALAAILPLPL VEISHLAGSV VGAALLLVSA GLYRRLDGAA WLTGLLLLIG ALVSLAKGLD
YEEAILMLLL AGVLRWTRGA FYRRTRLTQE VLTPSWLASV ALMIGLPIWV GFFAYKRVPY
STDLFWRFSE HGDASRFLRA SLGVGLALAA LAVWRLLRPA PVAGPGLVSL EPPQGEAMAL
THRTDANLAY TGDKRFLCSP SGRAFVMYQV RGASWIVMGD PVGDPAEWSE LLWQLREGAD
AAQGRLLLYQ ISLQALPVAI DLGLQIVKYG EEARVDLAAF TLDTPSAKPL RYAVRRAEKE
GARFAIIARD ELAAHLPRLQ EISESWLREK GHREKGFSVG RFDPPISPAS TARSSCARRR
LSPSPISGRR RIAPSCRST