Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tpet_1542 |
Symbol | |
ID | 5170634 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thermotoga petrophila RKU-1 |
Kingdom | Bacteria |
Replicon accession | NC_009486 |
Strand | + |
Start bp | 1532164 |
End bp | 1534167 |
Gene Length | 2004 bp |
Protein Length | 667 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640564069 |
Product | carbohydrate binding module 27 |
Protein accession | YP_001245126 |
Protein GI | 148270666 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG3934] Endo-beta-mannanase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.000596448 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGTAGGT TTATGTTCAT TTTATCGATC GTTGCTCTCT CTTTCGTTCT CTTTGCAGAT GAGTTCGTGA GAGTGGAAAA CGGAAAATTC GTCCTTAATG GAAAAGAATT CAGATTCATT GGGAGTAACA ACTACTACAT GCACTACAAG AGCAACAGAA TGATAGACAG TGTTTTGGAG AGCGCCAGGG ATATGGGAAT AAAGGTGCTC AGAATCTGGG GTTTCCTCGA CGGGGAGAGT TACTGCAGAG ACAAGAACAC CTACATGCAT CCTGAGCCCG GTGTTTTCGG AGTGCCGGAA GGGATCTCAA ACGCCCAGAA TGGTTTCGAA AGACTCGACT ACACGATAGC GAAAGCGAAA GAACTTGGCA TAAAACTCAT CATCGTTCTT GTGAACAACT GGGACGACTT TGGTGGGATG AACCAGTACG TGAGGTGGTT CGGAGGAACC CACCACGACG ATTTCTACAG AGATGAAAGA ATCAAAGAAG AGTACAAAAA GTACGTGTCT TTCCTCATAA ACCATGTCAA CGTCTACACG GGAGTTCCTT ACAGGGAAGA GCCCACCATC ATGGCCTGGG AGCTTGCAAA CGAACTGCGC TGTGAGACGG ACAAATCGGG GAACACGCTC GTTGAGTGGG TGAAGGAGAT GAGCTCCTAC ATAAAGAGTC TGGATCCCAA CCACCTCGTG GCTGTGGGGG ACGAAGGATT CTTCAGCAAC TACGAAGGAT TCAAACCTTA CGGTGGAGAA GCCGAGTGGG CCTACAACGG CTGGTCCGGT GTTGACTGGA AGAAGCTCCT TTCGATAGAG ACGGTGGACT TCGGCACGTT CCACCTCTAT CCGTCCCACT GGGGTGTCAG TCCAGAGAAC TATGCCCAGT GGGGAGCGAA GTGGATAGAA GACCACATAA AGATCGCAAA AGAGATCGGA AAACCCGTTG TTCTGGAAGA ATATGGAATT CCAAAGAGTG CGCCAGTTAA CAGAACGGCC ATCTACAGAC TCTGGAACGA TCTGGTCTAC GATCTCGGTG GAGATGGAGC GATGTTCTGG ATGCTCGCGG GAATCGGGGA AGGTTCGGAC AGAGACGAGA GAGGGTACTA TCCGGACTAC GACGGTTTCA GAATAGTGAA CGACGACAGT CCAGAAGCGG AACTGATAAG AGAATACGCG AAGCTGTTCA ACACAGGTGA AGACATAAGA GAAGACACCT GCTCTTTCAT CCTTCCAAAA GACGGCATGG AGATCAAAAA GACCGTGGAA GTGAGGGCTG GTGTTTTCGA CTACAGCAAC ACGTTTGAAA AGTTGTCTGT CAAAGTCGAA GATCTGGTTT TTGAAAATGA GATAGAGCAT CTCGGATACG GAATTTACGG CTTTGATCTC GACACAACCC GGATCCCGGA TGGAGAACAT GAAATGTTCC TTGAAGGCCA CTTTCAGGGA AAAACGGTGA AAGACTCTAT CAAAGCGAAA GTGGTGAACG AAGCGCGGTA CGTGCTTGCA GGAAAGGTGG ATTTCTCTTC CCCGGAGGAG GTGAAAAACT GGTGGAACAG CGGAACCTGG CAGGCAGAAT TTGAGTCACC TGACATTGAA TGGAACAGTG AGGTGGGAAA TGGTGCGTTG CAGTTGAACG TGAAGCTGCC TGGAAAGAGC GACTGGGAAG AAGTGAGGGC AGCGAGGAAG TTCGAAAAGC TCTCCGAATG TGAGATCCTC GAGTATGACA TCTACATTCC AGACGTCGAA GGGCTCAAAG GAAGGTTGAG ACCGTACGCG GTTCTGAACC CCGGCTGGGT GAAGATAGGC CTCGATATGA ACAACACAAG CGTGGAAAGT GCGGAGATCG TCACTTTCGG TGGAAAAGAG TACAGAAAAT TCCACGTAAG GATTGAATTC GACAAGACAG CGGGGGTGAA CGAGCTTCAC ATAGGAATTG TCGGTGATCA TCTGAAGTAC AATGGACCGA TTTTCATCGA TAATGTAAAA CTCTACACAA AGGAGGCTGA ATAA
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Protein sequence | MRRFMFILSI VALSFVLFAD EFVRVENGKF VLNGKEFRFI GSNNYYMHYK SNRMIDSVLE SARDMGIKVL RIWGFLDGES YCRDKNTYMH PEPGVFGVPE GISNAQNGFE RLDYTIAKAK ELGIKLIIVL VNNWDDFGGM NQYVRWFGGT HHDDFYRDER IKEEYKKYVS FLINHVNVYT GVPYREEPTI MAWELANELR CETDKSGNTL VEWVKEMSSY IKSLDPNHLV AVGDEGFFSN YEGFKPYGGE AEWAYNGWSG VDWKKLLSIE TVDFGTFHLY PSHWGVSPEN YAQWGAKWIE DHIKIAKEIG KPVVLEEYGI PKSAPVNRTA IYRLWNDLVY DLGGDGAMFW MLAGIGEGSD RDERGYYPDY DGFRIVNDDS PEAELIREYA KLFNTGEDIR EDTCSFILPK DGMEIKKTVE VRAGVFDYSN TFEKLSVKVE DLVFENEIEH LGYGIYGFDL DTTRIPDGEH EMFLEGHFQG KTVKDSIKAK VVNEARYVLA GKVDFSSPEE VKNWWNSGTW QAEFESPDIE WNSEVGNGAL QLNVKLPGKS DWEEVRAARK FEKLSECEIL EYDIYIPDVE GLKGRLRPYA VLNPGWVKIG LDMNNTSVES AEIVTFGGKE YRKFHVRIEF DKTAGVNELH IGIVGDHLKY NGPIFIDNVK LYTKEAE
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