Gene Tpet_1309 details

Gene Information

• Locus tag: Tpet_1309
• Symbol: rpsE
• ID: 5170904
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Thermotoga petrophila RKU-1
• Kingdom: Bacteria
• Replicon accession: NC_009486
• Strand: +
• Start bp: 1310317
• End bp: 1310853
• Gene Length: 537 bp
• Protein Length: 178 aa
• Translation table: 11
• GC content: 45%
• IMG OID: 640563834
• Product: 30S ribosomal protein S5
• Protein accession: YP_001244899
• Protein GI: 148270439
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0098] Ribosomal protein S5
• TIGRFAM ID: [TIGR01021] ribosomal protein S5, bacterial/organelle type

Plasmid Coverage information

• Num covering plasmid clones: 1
• Plasmid unclonability p-value: 0.00000000278064
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGGAAACAC AGGGAGTTAT GAAAGAAATA CAGTATGAAG AATTCGAAGA GAAGATAATA 
GAAATAAGGA GAACCTCCAA AGTCACAAAG GGTGGTAAGA ATCTGAGCTT CAGAGTTGTT 
GCAATAGTTG GAAACAAAAA CGGTAAAGTG GGACTGGGAA TAGGAAAGGC AAGAGAGGTT 
CCTGAAGCGA TCAGAAAGGC CATATCTGCT GCAAAGAGAA ATATCATAGA GGTTCCTGTA 
ATCAACGGAA CCATACCGCA CGAAATCATA GGAAGACAGG ACGCTTCCAA AGTGCTTCTG 
AGACCAGCAG CGCCAGGTAC AGGTATCATC GCAGGTGGTA CTGTCCGAGC AGTTGTTGAA 
CTCGCGGGTA TTCAGAACAT ACTCACAAAA TCGCTCGGGT CCACCAATCC TTTGAACCTC 
GCTCTTGCAA CAATGAACGG TCTGAAGAAT CTCCTGGATC CAAGAAAAGT TGCAAAACTC 
AGGGATATCT CAGTCGAAGA AGTGTTCAAA GGTGTGAGGA GGGAGGACAA TGCCTAA 

 

Protein sequence

METQGVMKEI QYEEFEEKII EIRRTSKVTK GGKNLSFRVV AIVGNKNGKV GLGIGKAREV 
PEAIRKAISA AKRNIIEVPV INGTIPHEII GRQDASKVLL RPAAPGTGII AGGTVRAVVE 
LAGIQNILTK SLGSTNPLNL ALATMNGLKN LLDPRKVAKL RDISVEEVFK GVRREDNA