| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpet_0970 |
|---|
| Symbol | |
|---|
| ID | 5170724 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermotoga petrophila RKU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009486 |
|---|
| Strand | + |
|---|
| Start bp | 1005082 |
|---|
| End bp | 1006524 |
|---|
| Gene Length | 1443 bp |
|---|
| Protein Length | 480 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640563488 |
|---|
| Product | glycoside hydrolase family protein |
|---|
| Protein accession | YP_001244564 |
|---|
| Protein GI | 148270104 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1486] Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCATCTG TGAAGATCGG TATCATCGGT GCGGGGAGCG CGGTGTTTTC TCTGAGGCTT
GTGAGTGATC TTTGCAAAAC GCCGGGACTC TCTGGCAGCA CGGTCACCCT CATGGATATC
GACGAAGAAA GACTCGACGC TGTTCTGACC ATCGCGAAAA AATACGTTGA AGAAGTGGGA
GCGGATCTGA AATTCGAAAA AACCATGAAT TTAGATGACG TCATCATCGA CGCGGATTTT
GTGATAAACA CAGCGATGGT GGGTGGCCAT ACCTACTTGG AGAAAGTCAG ACAGATCAGT
GAGAAATACG GCTACTACAG AGGAATAGAC GCTCAGGAGT TTAACATGGT CTCCGACTAC
TACACCTTCT CCAACTACAA CCAGCTCAAG TACTTCGTTG AAATAGCAAG GAAGATAGAG
AAGCTCTCCC CAAAAGCCTG GTACTTGCAG GCAGCGAATC CCGTTTTCGA AGGAACAACC
CTTGTGACAA GAACGGTTCC CATAAAGGCA GTGGGATTCT GCCATGGACA CTACGGCGTG
ATGGAGATCG TAGAGAAACT GGGGCTGGAA GAAGAAAAAG TAGATTGGCA GGTCGCAGGA
GTGAACCACG GTATCTGGCT GAATAGGTTC AGATACAACG GGGAGAACGC GTATCCCCTC
CTTGACAGGT GGATCGAGGA AAAATCAAAA GATTGGAAAC CAGAGAACCC CTTCAACGAT
CAGCTCTCTC CCGCTGCGAT AGATATGTAC AGATTCTACG GTGTGATGCC CATCGGTGAC
ACCGTGAGAA ACTCTTCGTG GAGGTACCAC AGGGATCTTG AGACCAAGAA GAAATGGTAC
GGTGAACCCT GGGGAGGAGC AGATTCTGAA ATAGGCTGGA AATGGTACCA GGACACACTT
GGAAAGGTAA CGGAGATCAC AAAGAAGGTG GCAAAGTTCA TCAAAGAAAA TCCGTCCGCG
AGGCTCTCCG ACCTTGGAAG TGTTCTGGGA AAAGACCTCT CAGAAAAGCA GTTTGTGCTC
GAAGTAGAGA AAATCCTCGA TCCAGAAAGA AAGAGTGGAG AGCAGCACAT CCCATTCATC
GATGCGCTGT TGAACGATAA CAAGGCAAGA TTCGTGGTGA ACATACCAAA TAGGGGTATC
ATCCACGGAA TAGACGATGA CGTGGTCGTT GAAATCCCAG CCCTTGTGGA CAAGAACGGA
ATCCATCCCG AGAAGATCGA ACCACCGCTT CCAGATCGCG TGGTCAAGTA CTACCTGAGA
CCAAGGATCA TGAGAATGGA AATGGCTCTG GAGGCGTTCC TCACGGGGGA CATAAGGATC
ATAAAAGAAC TTCTCTACAG AGATCCAAGA ACGAAGAACG ACGAACAGGT AGAAAAGGTG
ATCGAGGAAA TCCTCGCACT CTCGGAAAAC GAAGAGATGC GGAAACATTA TCTGAAGAGA
TGA
|
|---|
| Protein sequence | MPSVKIGIIG AGSAVFSLRL VSDLCKTPGL SGSTVTLMDI DEERLDAVLT IAKKYVEEVG
ADLKFEKTMN LDDVIIDADF VINTAMVGGH TYLEKVRQIS EKYGYYRGID AQEFNMVSDY
YTFSNYNQLK YFVEIARKIE KLSPKAWYLQ AANPVFEGTT LVTRTVPIKA VGFCHGHYGV
MEIVEKLGLE EEKVDWQVAG VNHGIWLNRF RYNGENAYPL LDRWIEEKSK DWKPENPFND
QLSPAAIDMY RFYGVMPIGD TVRNSSWRYH RDLETKKKWY GEPWGGADSE IGWKWYQDTL
GKVTEITKKV AKFIKENPSA RLSDLGSVLG KDLSEKQFVL EVEKILDPER KSGEQHIPFI
DALLNDNKAR FVVNIPNRGI IHGIDDDVVV EIPALVDKNG IHPEKIEPPL PDRVVKYYLR
PRIMRMEMAL EAFLTGDIRI IKELLYRDPR TKNDEQVEKV IEEILALSEN EEMRKHYLKR
|
|---|
| |