| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpet_0828 |
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| Symbol | |
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| ID | 5170554 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermotoga petrophila RKU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009486 |
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| Strand | + |
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| Start bp | 842643 |
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| End bp | 843563 |
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| Gene Length | 921 bp |
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| Protein Length | 306 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640563347 |
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| Product | nifR3 family TIM-barrel protein |
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| Protein accession | YP_001244423 |
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| Protein GI | 148269963 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0042] tRNA-dihydrouridine synthase |
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| TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.00297059 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGAGCTTA AAGTCGGTCT TGCGCCGATG GCAGGATACA CTGATTCGGC ATTCCGCACT
CTGGCTTTCG AATGGGGTGC GGATTTTGCG TTCTCTGAAA TGGTGAGTGC AAAGGGTTTT
CTCATGAATT CTCAGAAGAC AGAAGAACTC TTACCACAAC CACATGAAAG AAACGTGGCG
GTCCAGATCT TTGGAAGCGA ACCGAGCGAA CTTTCTGAGG CAGCGAGGAT TCTCTCTGAA
AAGTACAAGT GGATAGATTT GAACGCTGGT TGTCCTGTGA GAAAAGTTGT AAAAAAAGGA
GCAGGCGGAG CTTTGTTGAA AGATTTGAGA CATTTTCGAT ACATTGTGAG GGAGCTCAGA
AAGAGTGTTT CTGGCAAATT TTCTGTGAAA ACTCGCCTTG GATGGGAGAA AAATGAAGTC
GAGGAGATAT ATCGAATACT CGTTGAGGAA GGAGTGGATG AGGTATTCAT TCACACGAGA
ACGGTGGTTC AGGGTTTCAC TGGGAAGGCT GAATGGAAGG CGTTGAGTGT TCTGGAAAAG
AGAGTTCCTA CCTTTGTGAG TGGTGATGTT TTCACCCCAG AAGACGCCAA AAGGGCTCTG
GAAGAAAGCG GATGTGATGG CCTTCTGGTA GCGAGAGGCG CGATAGGAAG GCCTTGGATT
TTCAAACAGA TAAAGGATTT CCTCCGAAGC GGAAGGTACT CTGAACCGTC CCGGGAAGAA
ATTCTTAGAA CGTTCGAAAG ACATCTCGAA TTGTTGATAA AGACGAAGGG TGAAAGAAAA
GCAGTTGTGG AAATGAGAAA GTTTCTGGCA GGTTATACAA AAGATTTGAA AGGCGCAAGG
AGATTCAGAG AGAAAGTTAT GAAAATAGAA AAAGTTCAAA TTTTAAAAGA GATGTTTTAT
AATTTCATCA AGGAGGTGTG A
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| Protein sequence | MELKVGLAPM AGYTDSAFRT LAFEWGADFA FSEMVSAKGF LMNSQKTEEL LPQPHERNVA
VQIFGSEPSE LSEAARILSE KYKWIDLNAG CPVRKVVKKG AGGALLKDLR HFRYIVRELR
KSVSGKFSVK TRLGWEKNEV EEIYRILVEE GVDEVFIHTR TVVQGFTGKA EWKALSVLEK
RVPTFVSGDV FTPEDAKRAL EESGCDGLLV ARGAIGRPWI FKQIKDFLRS GRYSEPSREE
ILRTFERHLE LLIKTKGERK AVVEMRKFLA GYTKDLKGAR RFREKVMKIE KVQILKEMFY
NFIKEV
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